Rickettsia prowazekii NMRC Madrid E: H374_160 Help Entry H374_160          CDS       T02544                                  Name (GenBank) hypothetical protein   KO K03046   DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Organism rpn  Rickettsia prowazekii NMRC Madrid E Pathway rpn03020   RNA polymerase Brite KEGG Orthology (KO) [BR:rpn00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     H374_160  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:rpn03021]     H374_160    03400 DNA repair and recombination proteins [BR:rpn03400]     H374_160 Enzymes [BR:rpn01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      H374_160 Transcription machinery [BR:rpn03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      H374_160 DNA repair and recombination proteins [BR:rpn03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       H374_160 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Biotin_lipoyl_2 Peptidase_M23 RnfC_N Motif Other DBs NCBI-GeneID:  15149778 NCBI-ProteinID:  AGJ01304 LinkDB All DBs Position complement(14992..19110) Genome browser AA seq 1372 aa AA seqDB search MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI GAEVIQQMLKELDFSKLKQELYDELHITSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTIAFDNEVGEGMMFSDLAEMEHALYNK FITIHTKIKYRRDQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVNDYPNHQKINAIYMMA ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEIIVPLAEKILGRTAAI DIFHPVTNDLILNKGELINESKLEQIESAGLDRIMIKSVLTCESSTGICSICYGRDLATG TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAKVKIISRNVV INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDSKGEV ITLSNGLEARYYLPVGAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDGTMSIEYMVPKGKHVVVNEGDFVKKGD LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD SGGTTLLVGEKIDRHEFDEINAKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV NT seq 4119 nt NT seq  +upstreamnt  +downstreamnt atgagcgtagttaatttttatggacaattaagtaatactcaacaatttgaccagataagg attaatatagccagtcctgatcaggtacgttcttggtcttttggtgaagtaacaaaacct gaaacgattaattatcgcacttttaaacctgagaaagacggtttattttgtgcaagaatt tttggtccagtcaaagattatgaatgtctctgcggtaaatataagcggatgaaaaaccgt ggcattacatgtgagaaatgtggtgttgaagttacagtttctagagtaagacgtgaacga atgggacatattgagcttgcggctcccgttgctcatatttggtttttaaagtcacttcct tcgagaattagtacgcttcttgatatgacaatgcgagatgtggaaaagattctttatttt gaaaattatgtagtagttgatccagggttatcaattttacaaaaaggagaacttttgaca gaagaagaattacaaaaagcaaaagataagtatggtgaagatgcatttactgcttctata ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa ttatacgatgaattacacattacttcttcagaagtcaaaaagaaaaaattagtaaagcgt ttaaaattagtcgaggattttttagagtcagaaaataagcctgaatggatgattatggat gttttacctgtgatccctcctgaaattagaccgcttgttatgcttgatggtggaagattt gctacttcagacttaaatgaactttatagaagggtaattaatagaaataatcgtttaaag aaattaatagagtcaaaagctcctgacataatagtcagaaatgaaaaaagaatgttacaa gaagctgtggatgcgttatttgacaatggtcgtcgcggtagagcagcaaaaaatgctaat aagcgcccatttaagtcattaagtgatatgcttaaaggtaagcaaggtcgttttcgtcag aatttactcggtaagagggttgattattcaggacgttcagtgatcgtagtagggcctgag cttaaacttcatcaatgcggtttacctaaaaaaatggctctagaactatttaagccgttt atttattctaagcttgagttgtatggtattgctacaactattaaggctgctaaaagaatg gtggaagcggaaaagcctgaagtttgggatgtacttgaagaggtaattagagagcatccg gttttactgaatagagctccaactttacataggcttggtattcaagcatttgaacctcta ttaatcgaaggtaaagcaatacagcttcatccgcttgtttgtgctgcgtttaatgcggat tttgatggtgatcagatggcggtacatattccattatcgattgaagcacagcttgaagct agggtatttatgatgtctacaaataatatcttaagtcctgcaaatggacgtcctattatt gtaccagataaagatatagtacttggtttatattatcttactattgcatttgataatgaa gtaggcgaagggatgatgttctcagatttagctgaaatggaacacgcgttatataataaa tttatcactattcatacaaagatcaaatatcgcagagatcagttaaatgctgaaggtaaa atggtacctgttatcattgatactacatatggtaggttaatggtcggtgagttattacct tctaatcctaatatagagtttaagtttattaataaacagctaactaaaaaagatatatca ttagttatagatttagtttatcgtcactgtggtcaaaaagcgacagttatttttgctgat cagttaatgaaattaggctttaaatatgcttgctcttcaggtatttcttttggaatggat gatatggtagtgccagaatctaagagtactcatatcaatgaaacacaacttgagataaaa gaatttgaacaacaatattcaaatggtttaattacttatggagagaaatataataaagta gttgatgcttggtcaagatgtacagatagagtagcaaacgatatgatgaaagagattgct acgccaccagttaatgattatccaaatcatcagaaaataaatgctatatatatgatggct atttctggagcaaggggttctttccagcagattaagcagctaggtggtatgcgaggttta atgacgaaatcaaacggtcaaattatacaaacgcctattatctctaactttaaggaaggc ttaactgaatttgagtgttttaattctgctaatggaatgcgtaaagggcaaatagatact gctttaaaaacagcaagttcaggttatttaacgaggaaattagtcgatgttgcacaagat tgtattattactgaaaaagattgtggtactgataaaggaattgaagtgaagagcgttatt gaaggcggagaaattatagtgcctttagctgaaaagattttaggccgtactgctgctatc gatatatttcatcctgttactaatgatctcattctcaataaaggtgagcttattaatgaa tcaaaactggaacaaattgagtcagctggacttgacagaattatgattaaatctgtatta acctgtgaaagtagtaccggtatatgtagcatatgttatggtagggatcttgctactggt acattagtatcagagggtgaggcaataggtgttatcgcggcccaatctattggggaacct ggtacacagcttacaatgagaacctttcatataggaggagctgcaacaaaaggtgctgaa gtttcttccgtagaagcatcctatgacgcaaaagtaaaaattataagtcgtaacgttgtt attaattccgaagaacgaaaaattgttatgagtcgtaattgtgaattattattgcttgat aataacggtaatgaaaaagctcgtcataaaattccatatggtgctagattacttgttgat gacggtgatatggtgattaaaacacaaaaactagcagaatgggatccttatactatacca attataacagagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt cgtgatgtaactgatgaagctactgggatacctagtaaagttattattgaatcaaagcaa tattcacgtggtgcagaattacgtccgcgtatacagcttttagattctaaaggtgaagtt ataaccttatcaaatggtttagaagctagatattacttaccggttggagcagtgttaagt gtagaagatggaatacaaatatcggtaggtgatatcattgcacgtatacctaaagaatca accactactaaagatattaccggtggtttaccaagagttgctgaacttgtagaagcaaga cgtcctaaagatcatgcagtgatcgctgaggttgatggtagagtagaattcggtaaagac tataaatctaagagacgtattattatacatccaattgatggaacaatgtctattgaatat atggtacctaaaggcaagcatgttgtagtgaacgaaggagactttgttaaaaaaggtgat ttattaattgatggtaatcctgtactgcaagatattttaaaagtaatgggtgtagaagtg cttgcaaattatattgttaaggaggttcaagctgtttatcgcctacaaggtgtaaaaatt gatgataaacacatagaagttattatccgtcagatgttacaaaaagtagaagttacagat tcaggtggcactacattactagtaggtgaaaaaatagataggcatgaatttgatgaaata aatgcaaaagctatgaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt attactaaagcttctctacaaactagatcatttatttctgctgcatcattccaagagact actagagttttaactgaagcagcgattgcaggtaaagtagataagttacgaggactaaaa gaaaacgtgatagttgggcgattagtacctgctggcactggttactttatggataaaatg cgtaaagcagctgtaaagcttgatgaagagaatgtataa

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