Rodentibacter pneumotropicus: NCTC8284_02638
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Entry
NCTC8284_02638 CDS
T05800
Symbol
rnb_1
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rpne
Rodentibacter pneumotropicus
Brite
KEGG Orthology (KO) [BR:
rpne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rpne03016
]
NCTC8284_02638 (rnb_1)
Enzymes [BR:
rpne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC8284_02638 (rnb_1)
Transfer RNA biogenesis [BR:
rpne03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC8284_02638 (rnb_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
DUF2274
Motif
Other DBs
NCBI-ProteinID:
VEH67452
UniProt:
A0A3S5ES93
LinkDB
All DBs
Position
1:1594168..1595475
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AA seq
435 aa
AA seq
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MFQDNPLLAQLKQQIHESKERVEGVVKSTDKAYGFLECDKKSYFISPPAMKKVMHGDKIT
ATIEKQGDKEQAEPESLIEPMLTRFIAKVRFNKDKKLQVLVDHPSINQPIGAQQAKSVKE
ELQEGDWVVANLKTHPLRDDRFFYATINQFICRTEDEFAPWWVTLARHEQSRYPVQGADH
YEMLDRQAREDLTALHFVTIDSESTQDMDDALYIEPIEQNGEQIGWKLVVAIADPTAYIA
LDSQIEKDAKQRCFTNYLPGFNIPMLPRELSDELCSLIANETRPALVCYIETDLQGNITE
KPHFVSAYVQSKAKLAYNKVSDYLEQAPDAWQPETAEINEQIQRLHQFTLARINWRKTHS
LLFKEKPDYSFVLAENGKVQEIKAEHRRIANQIVEESMIIANICAAQFLNEQAQTGIFNT
HSGFDKNSWKTPVIS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccactactcgcacaactcaaacaacaaattcacgaaagcaaagaa
cgcgttgaaggtgtggtaaaaagcaccgataaagcctatggttttttagaatgtgacaag
aaaagctattttatctccccgccagccatgaaaaaagtgatgcacggggataaaattacc
gccaccattgaaaagcaaggcgataaagaacaagcggagccggaatccttaattgaaccc
atgctgacccgttttattgccaaagtgcggttcaataaagacaagaaattacaagtattg
gtggatcatccaagtattaatcaacctattggtgcacaacaagccaagtctgtaaaagaa
gaattgcaagaaggagattgggtggtggccaatttgaaaacccacccattacgggatgat
cgctttttctatgccactattaatcaatttatctgccgtactgaagatgagtttgcccct
tggtgggtcaccctcgcccgtcacgaacaatcccgttatccggtacaaggcgcagatcac
tatgaaatgcttgatcgacaagcccgtgaagatttgaccgcacttcattttgttactatt
gacagtgaaagcacacaggatatggacgatgctctctatatcgaacccattgagcaaaat
ggggagcaaatcggttggaaattagtggtagcaattgccgatcccaccgcctatatcgcc
cttgattcacaaattgaaaaagatgcaaaacaacgttgtttcaccaattacctccccggt
tttaatattccaatgttgccacgagagctttccgatgaactttgttctttaatagcaaat
gaaacccgccctgccctagtttgctatattgaaacggatttgcaaggcaacatcaccgaa
aaaccgcattttgtttcggcttatgtgcaatccaaagctaaacttgcctataacaaggta
tctgattatttagaacaagcccccgatgcgtggcaaccggaaactgctgaaatcaacgag
caaattcaacgtttacaccaattcacactagcacgtatcaactggcgtaaaacccattcg
ttgttattcaaagaaaaaccggattattcttttgtgctggctgaaaacggaaaagtgcaa
gaaatcaaagcagaacaccgccgcattgccaatcagattgtggaagaatccatgattatt
gcgaatatttgtgcagcacagttcttaaacgaacaagctcaaacgggtattttcaatacg
catagcggttttgataaaaattcttggaaaacgcccgtcatttcttaa
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