Rodentibacter pneumotropicus: NCTC8284_03421
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Entry
NCTC8284_03421 CDS
T05800
Symbol
mutM_3
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rpne
Rodentibacter pneumotropicus
Pathway
rpne03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rpne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC8284_03421 (mutM_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpne03400
]
NCTC8284_03421 (mutM_3)
Enzymes [BR:
rpne01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NCTC8284_03421 (mutM_3)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NCTC8284_03421 (mutM_3)
DNA repair and recombination proteins [BR:
rpne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NCTC8284_03421 (mutM_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_8
DZR
DUF7573
Zn_ribbon_3
Zn_ribbon_SprT
Zn_ribbon_6
Zn_ribbon_TiaS
DUF4428
Zn_ribbon_Nudix
Zn_Ribbon_1
Zn_ribbon_TFIIB
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
VEH68191
UniProt:
A0A448MSN3
LinkDB
All DBs
Position
1:2079929..2080366
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AA seq
145 aa
AA seq
DB search
MKLGPEPLSDEFNAEYLFKKSRKKLTALKTFLMDNSIVVGVGNIYANESLFLCGLHPQKV
TANLTQKQCILLVDTIKSVLAKAIQQGGTTLKDFLQPDGRPGYFAQELLVYGNKGKPCPK
CGTKIESLVIGQRNSYICPHCQKKK
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
ttgaaactcggccctgaaccgctttctgatgaatttaacgccgaatatctttttaaaaaa
tcccgaaaaaaattgaccgcacttaaaactttcttaatggataattcaattgttgtcggt
gtcggtaatatttacgccaatgaaagtttatttttatgtggcttacatccacaaaaagtg
acggcaaatctaacccaaaaacaatgtatattattagtagatacaatcaaatccgtactc
gcaaaagcgatacaacaaggaggaacaacacttaaagattttttacagcctgatggacgc
cccggttattttgcgcaagaattattggtctatggtaataaaggtaagccttgtccaaag
tgcggtacaaaaattgaaagtttagtcattgggcaacgcaacagctatatttgtcctcac
tgtcaaaagaaaaagtga
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