Rodentibacter pneumotropicus: NCTC8284_03585
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Entry
NCTC8284_03585 CDS
T05800
Symbol
rnr_1
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rpne
Rodentibacter pneumotropicus
Pathway
rpne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC8284_03585 (rnr_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpne03019
]
NCTC8284_03585 (rnr_1)
03016 Transfer RNA biogenesis [BR:
rpne03016
]
NCTC8284_03585 (rnr_1)
Enzymes [BR:
rpne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC8284_03585 (rnr_1)
Messenger RNA biogenesis [BR:
rpne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC8284_03585 (rnr_1)
Transfer RNA biogenesis [BR:
rpne03016
]
Prokaryotic type
tRNA degradation factors
NCTC8284_03585 (rnr_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
HTH_12
OB_RNR_1st
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
VEH68352
UniProt:
A0A3S4URW7
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All DBs
Position
1:2183066..2184649
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AA seq
527 aa
AA seq
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MHSPLYSVKLSSIFKTVKHNDKKKYQDPHYQQELAKYGNPIPSRELILSVIRENNAPMNR
EEILTALSIRNEEKMEAMRRRLRAMENDGQLVFTKRKRYALPEKLDLVKGLVIGHQEGYG
FLQVEGKKEDLFIPNHQMQRVMHGDFVLAQPTNLDHRGRREVRIVRVLESRKKQIVGRFF
LENGFGYVVPDDNRIGRDILVPNEHRNGARMGQVVVVELQQRSAAFNQPIGVITEILGDS
MAKGMEVEIALRNHDIPHQFPSAVEKYVKKFTEEVPEDAKKGRVDLRDLPLVTIDGEDAR
DFDDAVYCEKQSKGWKLWVAIADVSYYVRLHSALDNEAHNRGNSVYFPNRVVPMLPEILS
NGLCSLNPQVDRLCMVCEMHISAKGKLTSYRFYEAVMNSHARLTYTKVAKILEGDRELRE
RYYALVPHLEELYHLYQALLSGRHQRGAIDFETIESKFIFNAMGRIERIEPVIRNDAHKI
IEECMILANIAAANFMENIMNRPCIVFTLRQVKKNSHHSAPFLASLV
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
ttgcattctcccctttacagtgtcaaactctcctcaatttttaaaactgtaaaacataat
gacaaaaagaaatatcaagatccccattaccaacaagaattagcgaagtacggtaatcct
atcccaagtcgggagcttattttaagtgtgattcgcgaaaataatgcaccaatgaatcgg
gaagaaattttgaccgcactttccattcgtaatgaggaaaaaatggaggcaatgagacgc
cgtttacgtgctatggaaaatgatggacagctagtgttcactaaacgtaaacgctatgcc
ctgccggaaaaattagatcttgttaaggggctagtgatcggtcatcaagaaggctacggc
tttttacaagtcgagggcaaaaaagaggatttattcattcccaatcatcagatgcaacga
gttatgcacggtgattttgtattggcacaaccgacaaatttagatcaccgtggacgccgt
gaagtacgtattgtacgagtattggaaagccgcaaaaaacaaattgtcggtcgctttttc
ttggaaaatggctttggttatgttgtgcctgacgacaaccgtatcgggcgtgatattctt
gtaccaaacgaacaccgcaacggcgcacgtatggggcaagtggttgtggtggaattgcaa
caacgctccgctgctttcaatcagccaataggggttatcacagaaattttgggcgatagc
atggcgaaagggatggaagtcgaaattgccttacgcaatcacgacatcccccaccaattc
ccaagtgcggtggaaaaatatgttaaaaaattcactgaggaagtccctgaagacgcaaag
aaaggtcgtgtggatttgcgtgatttaccgctcgtcaccattgacggtgaagatgcacgg
gattttgatgatgcagtgtattgcgaaaaacagagcaaaggttggaaactttgggtagcg
attgcggatgtcagttattacgtacgtttgcattcagccctagataacgaagcccataat
cgggggaattcggtgtattttccaaatcgagtcgtgccgatgctaccggaaattttatct
aacggcttgtgttcgctcaatccgcaagtggatcgtctatgtatggtgtgcgaaatgcac
atttctgccaaaggcaaactcaccagttatcgtttttatgaagcagtgatgaattcccac
gcacgtttgacctacaccaaagtggcgaaaattttggaaggtgatagggaacttcgtgaa
cgttattacgcgctcgtccctcatttagaggaactttatcatctttatcaggcattactt
tccggccgtcatcaacgtggtgccattgattttgaaaccattgaaagcaaatttatcttt
aatgccatggggcgcattgaacgaattgagcctgtgatccgcaacgatgcccataaaatc
attgaagaatgtatgattcttgccaatatcgctgccgctaattttatggaaaacataatg
aaccggccctgtatcgtattcacgctacgccaagtgaagaaaaactcacatcattccgcg
cctttcttagcgagtttggtttaa
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