KEGG   Roseitalea porphyridii: E0E05_00825
Entry
E0E05_00825       CDS       T05862                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rpod  Roseitalea porphyridii
Pathway
rpod03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rpod00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E0E05_00825 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpod03021]
    E0E05_00825 (rho)
   03019 Messenger RNA biogenesis [BR:rpod03019]
    E0E05_00825 (rho)
Transcription machinery [BR:rpod03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     E0E05_00825 (rho)
Messenger RNA biogenesis [BR:rpod03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     E0E05_00825 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB S1CSD-TOTE-2 AAA_22 AAA_25 NACHT AAA Spore_III_AA
Other DBs
NCBI-ProteinID: QBK29262
UniProt: A0A4P6UVY4
LinkDB
Position
complement(169659..170924)
AA seq 421 aa
MEQMKLHDLQQKSAPELVEFAESLEVENASVLRKQELMFAILKRLAADDIEIIGEGVVEV
LQDGFGFLRSASANYLPGPDDIYISPSQIRRFSLKTGDTVQGTIRAPKDGERYFALLKVN
TINFDDPERIRHKSHFDNLTPLYPDSRINMEIENAQTKDLSSRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRSDLSKIFVLRRILSPMGTTDAIEFLIDKLKQTKNNAEFFDSMN
A
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggaacaaatgaagctacacgatttgcagcagaagtctgcgcccgaactggtggagttc
gccgagagccttgaggtcgagaacgcctcggtcctgcgcaagcaggaactgatgttcgcc
atcctcaagcggcttgcggccgacgatatcgagatcatcggtgagggcgtggtcgaagtg
ctgcaggacgggttcgggtttctgcgctcggcgagcgcgaactacctgcccggtcccgac
gacatctacatctcgccctcccagatccggcgtttctcgctgaagacgggcgatacggtg
cagggcaccatccgcgcgccgaaggacggcgaacgctatttcgcgctgctcaaggtcaac
acgatcaatttcgacgatcccgagcggatccggcacaagagccatttcgacaatctgacg
ccgctctatccggattcgcggatcaacatggagatcgagaacgcgcagaccaaggacctg
tcctcgcgggtgatcgatctggtggcgccgctcggcaagggccagcgcggcctgatcgtc
gcgccgccccgaaccggcaagacggtgctcctgcagaacattgcccattctatcaccgcc
aatcaccccgaatgctatctgatcgttcttctgatcgacgagcggcccgaggaagtgacc
gacatgcagcggtcggtgaagggtgaagtggtctcgtccaccttcgacgagccggccgtg
cgccatgttcaggtcgccgagatggtgatcgagaaggcgaagcgcctggtcgaacatggc
cgtgacgtcgttatccttctggattcgatcacacgccttggccgggcctacaacaccgtg
gtgccgtcctcgggcaaggtgctcacgggcggtgtggacgcgaacgccttgcagcggccc
aagcgcttcttcggcgcggcgcgcaacatcgaggaaggcggatcgctgacgatcatcgcg
accgcgctgatcgacacgggcagccgcatggacgaggtgatcttcgaggagttcaagggc
acgggcaactcggaaatcgtgctcgaccgcaaggtggccgacaagcgcatcttcccggcg
atggacattctcaagtccggcacccgcaaggaagacctgctggtgccgcgatcggacctg
tcgaagatcttcgtgctgcggcggatcctgtcgccgatgggcacgacggacgcgatcgag
ttcctgatcgacaagctcaagcagaccaagaacaatgccgagttcttcgactcgatgaac
gcctga

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