Roseitalea porphyridii: E0E05_06710
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Entry
E0E05_06710 CDS
T05862
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rpod
Roseitalea porphyridii
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rpod03016
]
E0E05_06710 (rnd)
Enzymes [BR:
rpod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E0E05_06710 (rnd)
Transfer RNA biogenesis [BR:
rpod03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E0E05_06710 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QBK30317
UniProt:
A0A4P6UYY1
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All DBs
Position
complement(1374591..1375781)
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AA seq
396 aa
AA seq
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MSDTHDTVPDPITTTDDLAATCRRMAAHDHVTIDTEFVRETTFWPVLCLVQIASADEAVL
IDPMADGIDLAPLFDLLNDESVIKVFHAARQDIEIFHHLSGRIPHPIFDTQVAAMVLGFG
DAIAYDQLVKRTTGAHIDKSSRFTDWALRPLSDKQLAYALADVTHLRDVYARLKAMLDER
GRAHWVAEEMAVLTSPATYEVHPEEAWRRLKLRVRKPAELAVMQKLAAWRERQARERDVP
RNRVLKDDAIYEAAQQRPADQRALSRLRTVHKGMERSATGAAILDAVAQVKAMDKDDLPA
VPRPPNAPEGAGAASELLKVLLKLTAEKYNVAQRVIATSDHLDQIAAHGEEADVPAMRGW
RRELFGDEALRLLNGEIALGFSERRIASVDLTAARQ
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacacgacaccgttcccgacccgatcacgaccacggacgatctggccgcc
acatgccggcgcatggccgcgcacgatcatgttaccatcgataccgaattcgtccgcgaa
acgacgttctggccggtgctttgcctggtccagatcgccagtgccgacgaagccgtgctt
atcgatccgatggcggacggcatcgatctggcgccgctgttcgacctgctcaacgacgag
agcgtcatcaaggtcttccacgccgcccggcaggacatcgagatcttccaccatctgagc
ggccgcattccgcatccgatcttcgacacgcaggtcgccgccatggtgctcggcttcggt
gacgcgatcgcctacgaccagctcgtcaagcgcacgaccggcgcccatatcgacaagtcc
tcgcgcttcaccgactgggcgctccgtccgctcagcgacaagcagctcgcctacgcgctc
gccgacgtcacgcatttgcgcgacgtctacgcgcgattgaaggcaatgctcgacgagcgc
ggccgggcgcactgggtggccgaggagatggcggtgctgacctcgccggcgacctacgag
gtccatccggaagaggcctggcgacggctcaagctgcgcgtgcgcaagccggccgaactg
gcggtcatgcagaagctggcggcctggcgtgaacggcaagcgcgcgagcgcgacgtgccg
cgcaaccgcgtgctgaaggacgatgcgatctacgaggcggcccagcagcggccggccgac
cagcgggcgctgtcgcggctgagaaccgtgcacaaggggatggagcgctcggcgaccggc
gcggcgatccttgacgctgtcgcccaggtcaaggcgatggacaaagacgacctaccggcc
gtgccgcgtccgccgaacgcgcccgagggcgcgggcgcggccagcgagctgctcaaggtg
ctgctcaagctgaccgccgagaagtacaatgtcgctcagcgcgtgatcgccacctcggac
catctcgaccagatcgccgcgcatggcgaagaagccgacgtgccggcgatgcgcggctgg
cggcgcgaactgttcggcgacgaggcgctgcggctgctgaacggcgagatcgcgctcggc
ttcagcgagcggcggatagcgagcgttgatctgacggcggctcggcaataa
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