KEGG   Roseitalea porphyridii: E0E05_07310
Entry
E0E05_07310       CDS       T05862                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rpod  Roseitalea porphyridii
Pathway
rpod03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rpod00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E0E05_07310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rpod03019]
    E0E05_07310
Messenger RNA biogenesis [BR:rpod03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     E0E05_07310
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 RMMBL Lactamase_B Anti-Pycsar_Apyc1 VMAP-M19
Other DBs
NCBI-ProteinID: QBK30422
UniProt: A0A4P6UZE3
LinkDB
Position
1510517..1512202
AA seq 561 aa
MAPKGEPELVFVPLGGVGEIGMNLALYGYGPETRRQWLMVDCGVTFPGPDLPGVDLVLPD
IRFVEAERKNLAGIVITHAHEDHYGALLSLYHRLSPDGSMPVHMTPFGAGMLEAKAQGEA
DAPKVPIETYDGGERFSIGPFDIEAIAVTHSIPEPVSLAIRTPAGLVLHTGDWKHDIDPA
LGPLTDEDRFRQLGDEGVLALICDSTNAMREGESPSERQVSQGLAEVIANARGRVAITTF
SSNVGRIKSIALAAQAADRRVLLMGRSMKRVVDVATDLGYMEGIEPFLDEAEFASVPRDQ
VVIILTGSQGEPRAALAKLGRDEMRDVKLTAGDMVVYSSRTIPGNEKAILETKNRLIDMG
IDVIEDGDALVHVSGHPRRSELRQMYQWTRPKIGVPVHGEAAHLSAHAALMREAGIASVM
DARNGDLVRLAPGDPEIIDDVPHGEIYKDGAIIGDDDAVGVVDRRRLSFAGHVAVSVILD
RKHEIAVEPQLVAVGIPRNDAHGEDLEDILFEAAVGAVESMPRGRRKDLDLVEEAVTKAV
RAAARKAWGKKPLVTVLVDRV
NT seq 1686 nt   +upstreamnt  +downstreamnt
atggcccccaagggcgaacccgaactggtattcgtgccgcttggcggcgttggcgagatc
ggcatgaacctggccctttacggctatggtcccgagacccggcgccagtggctgatggtc
gactgcggcgtgacctttcccggtcccgacctgcccggcgtcgatctggtcctgcccgac
atccgcttcgtcgaggccgagcgcaagaacctcgccggcatcgtcatcacgcacgcacat
gaggaccattacggcgcgctcctgtcgctctatcaccgcctgtcgccggacggctccatg
cccgtgcacatgaccccgttcggcgccggcatgctcgaagccaaggcgcagggcgaggcc
gacgcgccgaaggtgccgatcgagacctatgatggcggcgagcgcttctcgatcggcccg
ttcgacatcgaggccatcgccgtcacccattcgatccccgagccggtctcgctcgccatc
cgcacaccggcgggcctggttctgcacaccggcgactggaagcacgacatcgatccggcg
ctcggcccgctgaccgacgaggaccgcttccggcaactgggcgacgagggcgttctggcg
ctgatctgcgattcaaccaacgccatgcgcgagggcgagtcgccgtccgaacggcaggtc
tcgcaggggctcgccgaggtgatcgccaacgccaggggccgcgtggcgatcacgacgttt
tcgtccaatgtcggccgcatcaagtcgatcgcgctcgccgcccaggcggcagaccggcgc
gtgcttctgatgggccggtcgatgaagcgggtcgtcgatgtcgccaccgaccttggctac
atggagggcatcgagccgtttctcgacgaggccgaattcgcctcggtgccgcgcgatcag
gtggtcatcatcctgaccggttcgcagggcgaaccgcgcgccgcgctggccaagctcggc
cgtgacgagatgcgcgatgtcaagctcaccgccggcgacatggtcgtctattcctcgcgg
acgattcccggcaacgagaaggccatccttgagacgaagaaccggctcatcgacatgggc
atcgacgtgatcgaggacggcgacgcgctggtccatgtctccggccatccccgccgcagc
gaactgcgccagatgtatcagtggacgcgcccgaagatcggcgtgccggtgcatggcgaa
gcggcgcatctctccgcccatgcggcgctgatgcgcgaggccggcatcgcctcggtgatg
gacgcgcgcaacggcgatctggtgcgtctcgctccgggcgacccggaaatcatcgacgat
gtgccgcacggcgagatctacaaggacggcgccatcatcggcgatgatgacgcggtcggt
gtggtcgaccggcggcggctctcctttgccggccatgtcgcggtctcggtgatcctcgac
aggaagcatgagatcgcggtggaaccgcaactcgtcgcggtcggcatcccgcgcaacgat
gcccacggcgaggatctcgaggacatcctgttcgaggccgcggtgggcgcggtcgagtcg
atgccgcgcggccggcgcaaggacctcgatctggtcgaggaggcggtgaccaaggccgtg
cgcgccgccgcccgcaaggcatggggcaaaaagccgctcgtgacggtgctcgtcgaccgc
gtatag

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