Roseitalea porphyridii: E0E05_07340
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Entry
E0E05_07340 CDS
T05862
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpod
Roseitalea porphyridii
Pathway
rpod03030
DNA replication
rpod03430
Mismatch repair
rpod03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0E05_07340
03430 Mismatch repair
E0E05_07340
03440 Homologous recombination
E0E05_07340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpod03032
]
E0E05_07340
03400 DNA repair and recombination proteins [BR:
rpod03400
]
E0E05_07340
Enzymes [BR:
rpod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E0E05_07340
DNA replication proteins [BR:
rpod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E0E05_07340
DNA repair and recombination proteins [BR:
rpod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E0E05_07340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
DUF655
Motif
Other DBs
NCBI-ProteinID:
QBK30427
UniProt:
A0A4P6UZ74
LinkDB
All DBs
Position
1517006..1520539
Genome browser
AA seq
1177 aa
AA seq
DB search
MDSVDDRANAGEAPGADAPEAGLIDPGFIHLRVHSSYSLLEGALKLDRIIEWAKHNGAPA
LAVTDTSNLFGALEFAQKASGAGIQPIIGCQLGLRFDAEGEETRGRAGRAGHADPAIVLL
AADETGYRNLVELVSRAYLDEDDLDAVRVHDTWLAQRAEGLIALTGGPGGPVGSALAAGQ
PRVAEQRLASLAALFGDRLYVELQRHGDWDRTVEARTVELAYAHRLPLVGTNEAFFFARE
DFEAHDALIAIAEGALLSMDDRRQLTADHWLKPPADMITLFSDLPEATANTVEIARRCSW
FPRKIKPILPRFAAVPEGATGEEAEQAEADELRRQAVEGLNARLEHQGLADGYSRDDYDE
RLDHELSIIARMKFPGYFLIVADFIKWAKAQNIPVGPGRGSGAGSLVAWALTITDIDPLR
FSLLFERFLNPERVSMPDFDIDFCQDRRDEVIRYVQDKYGRDQVAQIITFGTLQARAVLR
DVGRVLEMPYGQVDRLCKLVPNNPANPTKLADAIAGEAKFAEEREREPIVGQLLDMALKL
EGLYRHASTHAAGIVIGDRPLSQLVPLYRDPRSDMPVTQFNMKWVEDAGLVKFDFLGLKT
LTVLDMAVRLIARRGETIDLSALPLDDPPTYQMMARGETVGIFQVESPGMRKALVGMKPD
RIEDIIALVALYRPGPMDNIPTYNARKHGDEQIASIHPKIDHLVAETQGVIVYQEQVMEI
AQLLAGYSLGEADLLRRAMGKKIRAEMDKQRVRFVEGAVERGVSKAQADFIFDLLAKFAD
YGFNKSHAAAYAMVAYQTAYLKAHYPVEFLAASMTYDMANTDKLNDFRRDAERLDITVVP
PSVQTSFRAFEVGDRRIFWALSAIKGVGDAAVDHIVAVRPDGGFDSLEDFARRIDPKIVG
RRVLEALIDAGALDCFGHDRAVLAAGLDRILGLSQRVADEAESGQGDIFGAVEASQPERL
SLPADAHWPDAERLMRELRAIGFYFSAHPLDAYAPILEKRRVQAYADFAAAIRHGATAGR
LAGTVAHKQVRRTRNGNKMGILTLSDPTGQYEVVMFSEMLEQFADAAEPGRSFVLTVGVR
HRDDDSISLTLNSLSALDEHAGADAAHMLRVFMRDAAPARSVARQLRQNGPSPVSLIVIK
PDGAGEVEIELPGQYSVSGPVASAIKAVPGVVDVELV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacagtgtggacgatcgcgcaaacgcaggcgaggcgcccggggcggatgctccagaa
gcgggcctcatcgatccgggcttcatccatctgcgggtgcattcgtcctattcgctgctc
gagggcgcgctgaagctcgacaggatcatcgagtgggccaagcacaacggcgcccccgcg
ctcgccgtgaccgacacgtcgaacctgttcggcgcgctcgagttcgcccagaaggcgtcg
ggcgccggcatccagccgatcatcggttgccagcttggtctgcgtttcgacgccgagggt
gaggaaaccaggggccgcgccggccgggcaggccatgccgatccggcgatcgtcctgctc
gccgccgacgagaccggttaccgcaacctcgtcgaactggtcagccgcgcctatctggac
gaagacgatctcgacgccgtgcgggtgcacgacacctggctcgcccaacgggccgaaggg
ctgatcgcgctgaccggtgggccgggcgggccggtcggttccgcgctcgccgccggccag
ccaagggtcgccgagcagcggctcgcatcgctggccgcgctgttcggcgatcgtctctac
gtcgagctccagcgccatggcgactgggaccggaccgtcgaggcgcgcaccgtcgaactg
gcctacgcccaccggctgccgctggtcggcacgaacgaggccttctttttcgcgcgcgag
gatttcgaggcccacgacgcgctgatcgccatcgccgagggtgcgcttttgtcgatggac
gatcgccgccagctgaccgccgatcactggctgaagccgcccgccgacatgatcaccctg
ttttccgatctgcccgaggcgaccgccaatacggtcgagatcgcccggcgctgttcctgg
ttcccgcgcaagatcaagccgatcctgccgcgctttgccgccgtgcccgagggtgcgacg
ggcgaggaggccgaacaggccgaggcggacgagttgcgccgccaggccgtcgagggactg
aacgcccggctcgagcatcagggcctggccgacggctacagccgcgacgattacgacgag
cggctcgatcacgaactgtcgatcatcgcgcggatgaagttccccggttacttcctgatc
gtcgccgacttcatcaagtgggccaaggcgcagaacatccccgtgggcccggggcgcggc
tcgggtgcgggctcgctggtcgcctgggcgctgacgatcaccgacatcgacccgctgcgc
ttctcgctgctgttcgagcgcttcctcaatcccgaacgcgtgtcgatgcccgacttcgac
atcgacttctgccaggaccggcgcgacgaggtgatccgctacgtccaggacaagtacggc
cgcgaccaggttgcccagatcatcaccttcggaacgctgcaggcgcgcgcggtgctgcgc
gatgtcgggcgcgtgctcgaaatgccctatgggcaggtcgaccgcctgtgcaagctggtg
ccgaacaacccggcgaacccgaccaagctggccgatgcgatcgccggcgaggccaagttc
gccgaggaacgcgagcgcgaaccgatcgtcggccagctgctcgacatggcgctcaagctc
gaagggctctaccggcacgcctccacccacgccgccggcatcgtgatcggcgaccggccg
ctgtcacagctcgttccgctctaccgcgacccgcgctcggacatgccggtcacccagttc
aacatgaagtgggtcgaggatgccgggctggtcaagttcgactttctcggcctaaagacg
ctgaccgtgctcgacatggcggtgcggctgatcgcccggcgcggcgagacgatcgatctt
tcggcgctgccgctcgacgacccgccgacctaccagatgatggcgcgcggcgagaccgtc
ggcatcttccaggtggaaagcccgggcatgcgcaaggcgctggtcggcatgaagcccgac
cgcatcgaggacatcatcgcgctggtcgcgctctatcggcccggtccgatggacaatatc
cccacctacaatgcgcgcaagcatggtgacgagcagatcgcctcgatccatccgaagatc
gatcatctggtcgcggagacgcagggcgtgatcgtctaccaggagcaggtgatggagatc
gcccagcttctggccggctattcgctcggcgaagccgatcttctgcgccgcgccatgggc
aagaagatccgcgccgagatggacaagcagcgggtgcgcttcgtcgagggcgccgtcgag
cgcggcgtctccaaggcgcaggccgacttcatcttcgacctgctggccaagttcgccgac
tacggcttcaacaagtcgcacgcggccgcctacgccatggtcgcctaccagacggcctat
ctgaaggcgcattatccggtcgagttcctcgccgcgtcgatgacctacgacatggccaac
accgacaagctgaacgatttccgccgcgatgccgaacggctcgacatcacggtcgtgccg
ccctcggtgcagacctcgttccgcgctttcgaggtcggcgacaggcgcatcttctgggcg
ctgtcggcgatcaagggcgtcggcgatgccgccgtcgaccacatcgtggcggtgcggccg
gacggcggcttcgacagccttgaggatttcgcccggcgcatcgatcccaagatcgtcggc
cggcgcgttctcgaagcgctgatcgatgcgggcgcgcttgactgcttcggccacgaccgg
gcggtgctcgccgccgggctcgaccggatcctgggcctttctcagcgtgtcgccgacgag
gccgaaagcgggcagggcgacatcttcggcgctgtcgaggcgagccagcccgaacgcctg
tctctgcccgccgacgcgcactggccggatgccgaacggctgatgcgcgaattgcgcgcg
atcggcttctacttctccgcccacccgctcgacgcctacgcgcccatcctcgaaaagagg
cgcgttcaggcctacgccgatttcgccgcggcgatccgccatggcgcgaccgccggccgc
cttgccggcaccgtcgcgcacaagcaggtgcgccgcacccgcaacggcaacaagatgggc
atcctgaccctgtccgatccgaccgggcagtatgaagtcgtcatgttctcggagatgctc
gaacagttcgccgatgcggccgagccgggccgaagcttcgtgttgaccgtcggcgtgcgg
caccgtgacgacgattccatctcgctgacgctcaattcgctcagcgcgctcgacgagcac
gccggcgccgatgcagcccacatgctgcgcgtgttcatgcgcgatgcggcgccggcgcgg
tccgtggcgcggcagctgcgccagaatgggccgagcccggtgtcgctgatcgtcatcaag
ccggacggggcgggtgaggtcgaaatcgaactgcccggccagtattcggtttccggcccg
gtcgccagcgccatcaaggcggtgcccggcgtggtcgacgtcgaactcgtctag
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