Roseitalea porphyridii: E0E05_07400
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Entry
E0E05_07400 CDS
T05862
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rpod
Roseitalea porphyridii
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpod03032
]
E0E05_07400 (topA)
03400 DNA repair and recombination proteins [BR:
rpod03400
]
E0E05_07400 (topA)
Enzymes [BR:
rpod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E0E05_07400 (topA)
DNA replication proteins [BR:
rpod03032
]
Prokaryotic type
DNA Topoisomerases
E0E05_07400 (topA)
DNA repair and recombination proteins [BR:
rpod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E0E05_07400 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
CARME
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QBK30439
UniProt:
A0A4P6V1C1
LinkDB
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Position
complement(1530234..1532873)
Genome browser
AA seq
879 aa
AA seq
DB search
MEVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPAKDGSVKPEDDFAMSWQVDTASNK
RLNEIASAVKAADGLILATDPDREGEAISWHVLEVLNKKKALKDKPVKRVVFNAITKNAV
LDAIAHPRDIDGPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ETEIEQFKPEEYWSILAQLKTAAEASFTARLTGFDGKKLTKMGVKDGDTAGAIKAMLEAA
SFKVANVEAKPVKRNPPPPFTTSTLQQAASAKLGFAPARTMQIAQKLYEGVDLGSETAGL
ITYMRTDGVQMAPEAIDSARSAIGERFGGRFVPEKPRFYSSKAKNAQEAHEAVRPTDFTR
APDAIRSVLTDEQFKLYDLIWKRGIASQMEQARLERTTVDILAEGNGKRAELRATGSVVT
FEGFFAAYTEHRDDQKADDEDGDDNRLPPMAEGETCAREAIEANQHFTEPPPRFTEASLI
KKMEEIGIGRPSTYSATVSTLKDRDYVRLDKRALVPEPKGRLVTAFLQDFFERYVEYDFT
ADLEEKLDLISDGKLAWKDVLRDFWRDFSAHVDETKELRIANVLDALNERLEPLVFPKRE
DGSDPRICPKCGTGQLSLKLGKFGSFVGCSNYPDCSYTRQLGQEGNGEADAFADGPQVLG
KDPFTGEEITLRTGRFGPYVQRGEGKEAKRTSVPKGWKPEEIDHEKALALLSLPRDVGAH
PETGKMISAGLGRYGPFVLHDGTYANLESVEEVFSVGLNRAVTLIAEKKAKGGARGRGAA
ALKELGEHPQVGGPVTVHDGRYGPYVKHGKINATIPKGTDPMSVDLPKAVELIAARAEKA
GKKVAGPSGAKKKATGKKKAAPKKATGKGKAAASASADE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcgttgtcgtcgaatcgccagccaaggcgaaaaccatcaacaaatatctgggg
tcgggctacaaggtcctggcctcgttcggccatgtccgtgatctgcccgccaaggatggc
tcggtcaagcccgaggacgacttcgccatgtcctggcaggtcgacaccgcctccaacaag
cggctgaacgagatcgcctcggcggtcaaggcggccgacgggctcattctcgccaccgac
cccgatcgcgagggcgaggcgatttcctggcatgtgctggaagtgctcaacaagaagaag
gcgctgaaggacaagccggtcaagcgcgtcgtcttcaacgcgatcacgaagaacgcggtt
ctcgacgccatcgcccatccgcgcgacatcgacggcccgctggtcgacgcctatctggcg
cgccgggcgctcgactatctggtcggcttcaccctgtcgcccgtcctctggcgcaagctg
cccggcgcccgttcggccggccgcgtccagtcggtcgcgctgcgtctcgtctgcgaccgc
gaaaccgagatcgagcagttcaagcccgaggaatactggtccatcctggcgcagctgaag
acggcggccgaggcgtccttcaccgcccggctgaccgggttcgacggcaagaagctgacc
aagatgggcgtcaaggacggcgacacggccggcgccataaaggcgatgctggaggcggcc
agcttcaaggtcgcaaacgtcgaggccaagccggtcaagcgcaatccgccgccgcccttc
accacatcgacgctgcagcaggccgcctcggcgaaactgggctttgcgccggcgcgcacg
atgcagatcgcccagaagctttacgagggcgtcgatctgggcagcgagaccgccggcctg
atcacctacatgcggaccgacggcgtgcagatggcgcccgaggccatcgacagcgcccgg
tctgcgatcggcgagcggttcggcggcaggttcgtgcccgaaaaaccccgcttctattca
tccaaggcaaagaacgcgcaggaagcgcacgaagcggtgcgaccgaccgatttcacacgg
gcgcccgatgcgatccgttccgtgctgaccgacgaacagttcaagctctacgatctgatc
tggaagcgcggcatcgccagccagatggaacaggcgcggctcgaacgcacgaccgtggac
atcctcgccgaaggcaacggcaagcgcgccgaactgcgcgcgacgggctcggtcgtcacc
ttcgagggcttttttgccgcctacaccgaacaccgcgacgaccagaaggccgatgacgag
gacggcgacgacaatcgcctgccgccgatggccgagggcgagacctgcgcgcgcgaggcg
atcgaggcgaaccagcacttcaccgagccgccgccgcgcttcaccgaagcctcgctgatc
aagaagatggaggagatcggcatcggccggccgtcgacctattcggcgacggtctcaacg
ctcaaggatcgcgactatgtgcgcctggacaagcgcgcgctggtgcccgaacccaagggc
cggctggtgacggcgttcctgcaggacttcttcgagcgctacgtcgaatatgatttcacg
gccgaccttgaggaaaagctcgacctgatctccgacggcaagcttgcctggaaggacgtg
ctgcgcgatttctggcgcgatttctcggcccatgtcgacgagaccaaggaactgcggatc
gccaacgtgctcgatgcgctcaacgagcggctcgaaccgctggtctttccaaagcgcgag
gacggatccgatccgcgcatctgtcccaaatgcggcaccggccagctcagcctgaaactg
ggcaagttcggctcgttcgtgggatgctcgaactatcccgactgcagctacacgcgccag
ctcggccaggaaggcaatggcgaggccgatgccttcgccgacggcccgcaggtgctcggc
aaggacccgttcaccggcgaggagatcaccctgcgcacgggccggttcgggccgtacgtg
caacgaggcgaaggcaaggaggccaagcgcacgagcgtgccgaagggctggaagcccgag
gaaatcgaccatgaaaaggcgctggcgctgctgtcgctgccgcgcgacgtcggcgcccac
cccgagaccggcaagatgatctcggccgggcttggccgctacggcccgttcgtgctgcat
gacggcacctacgccaacctcgaaagcgtcgaggaggtcttctcggtcgggctgaaccgg
gcggtcacgctgatcgccgaaaagaaggccaagggcggcgcgcgcggccgcggcgcggcg
gcgctcaaggaacttggcgagcatccgcaagtgggcggtccggtcacagtccatgacggc
cgctacgggccctatgtcaagcatggcaagatcaacgccaccatcccgaagggcacggac
ccgatgagcgtcgacctgccaaaagcggtcgaactgatcgccgcgcgcgccgaaaaggcg
ggcaagaaagtcgcgggcccgtccggcgcaaagaaaaaggcgacgggcaagaagaaggcg
gcgccgaagaaggcgacaggcaagggcaaggcggccgcttcggcctcggccgatgagtaa
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