Roseitalea porphyridii: E0E05_08235
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Entry
E0E05_08235 CDS
T05862
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpod
Roseitalea porphyridii
Pathway
rpod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0E05_08235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpod03021
]
E0E05_08235 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpod03400
]
E0E05_08235 (rpoC)
Enzymes [BR:
rpod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0E05_08235 (rpoC)
Transcription machinery [BR:
rpod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0E05_08235 (rpoC)
DNA repair and recombination proteins [BR:
rpod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0E05_08235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RnfC_N
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QBK30582
UniProt:
A0A4P6UZU9
LinkDB
All DBs
Position
1692185..1696393
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEIANLFNPQATSQNFDSIRISIASPEKIMSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDIERVLYFENYIVTEPGLTPLKEHQLLSEEEYMLAAEEYGEDQFTA
MIGAEAIQEILRTLDLPKTAVDLREELDATSSELKTKKLMKRLKVVENFIDSGNRPEWMI
MSIIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIVAENEPGEGMVFSDMGELHHALE
NKVVTLHTKIKGRFKTVDEDGNPVWQLHETTPGRMIIGELLPRNARVPFDICNTEMTKKN
ISAMIDTVYRHCGQKETVIFADRIMDLGFRHACTAGISFGKDDMVIPASKAKVVEETDKI
VKEYEQQYNDGLITFGEKYNKVVDAWARCDDRLTEETMAGIQAVEFAENGRQKPMNSIWM
MARSGARGSTRQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITAEDCGTDKGLTMTPIVDAGQVVASLGQRVLGRTV
LEDVVNLKTDEILVPAGTMVEEAHVEKIEEAGIQSVKIRSALTCEMQSGVCAVCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDTSFVEASYDGVVEIKNRNV
VRDSTGNLVAMGRNMAVIIRDEKGEERATHKLTYGAKLMVDDGDQIKRGQRLAEWDPYTR
PIMTEVEGTVSFEDLVDGISIQESADENTGITKREVIDWRSNPRGAELKPAITVMGKDGE
VAKLSRGGDARFMLSVDAVLSVEPGAKVKPGDVIARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAVIAEIDGTIRFGRDYKNKRRISIEPAEEGVEPAEYLIPKSRPFHLQDGDPIEK
GDYILDGNPAPHDILAVKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TEPGDSGYIAGDSVDRIELEDVNERLVEEGKQPASGEPVLLGITKASLQTPSFISAASFQ
ETTKVLTEASVAGKIDTLQGLKENVIVGRLIPAGTGGAMNQIRRIATSRDDLILDQRRAE
AEAEAADAMLEDMREDENAPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagagatcgccaatctcttcaatcctcaggccacttcgcagaatttcgactcc
atccggatctccatcgcgagcccggaaaagatcatgtcctggtcgttcggcgagatcaaa
aagcccgaaacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcg
cgcatcttcggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgcggcgtcgaggtcaccttgtcgcgcgtgcgccgc
gagcgcatgggccacatcgaactggccgcgcctgtcgcgcacatctggttcctgaaatcg
ctgccgagccgcatcgccacgctgctcgacatgacgctcaaggacatcgagcgggttctg
tatttcgagaactacatcgtcaccgaaccgggcctgaccccgctcaaggagcaccagctc
ctgagcgaggaggagtacatgctcgcggccgaggaatatggcgaggaccagttcaccgcc
atgatcggcgccgaggcgatccaggaaatcctgcgcacgctcgacctgccaaagacggcg
gtcgatctgcgcgaggaactggatgccacgtcgtccgagctgaagaccaagaagctgatg
aagcggctcaaggtcgtcgagaacttcatcgattcgggcaaccgtcccgaatggatgatc
atgagcatcatcccggtgatcccgcccgacctgcggccgctggtgccgctcgacggcggc
cgcttcgcgacctcggacctcaacgatctctaccgccgcgtcatcaaccgcaacaaccgc
ctcaagcggcttatggaactgcgcgcgccgggtatcatcatccgcaacgagaagcggatg
ctgcaggagtccgtcgacgcgctgttcgacaacggccggcgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcagcgacatgctcaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtggactattcgggccgttcggtcatcgtgaccggc
cccgaactgaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaag
ccgttcatttatgcgcggctcgacgccaagggctattcgtccaccgtcaagcaggccaag
aagctggtcgagaaggaaaagccggaagtctgggacatcctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcaccggctgggcatccaggcgttcgag
ccggtcctcatcgaaggcaaggcgatccagcttcacccgctggtctgcaccgcgttcaac
gccgacttcgacggcgaccagatggcggtgcacgttccgctgtcgctggaagcgcagctc
gaggcgcgcgtcttgatgatgtcgaccaacaacatcctgcacccggccaacggacagccg
atcatcgtgccgtcccaggacatggtgctgggcctgtattacctgtcgatcgtcgccgag
aacgagccgggcgagggcatggtgttctccgacatgggcgaactgcaccacgcgctcgag
aacaaggtcgtcaccctgcacaccaagatcaagggccggttcaagaccgtcgacgaggac
ggcaacccggtctggcagctgcacgagacgacgccgggccggatgatcatcggcgagctt
ctgccgcgcaacgcgcgcgtgccgttcgacatctgcaacaccgagatgaccaagaagaac
atctcggcgatgatcgacacggtctaccgccactgcggccagaaggagacggtgatcttc
gccgaccggatcatggatctgggcttccgccatgcctgcacggctggcatctcgttcggc
aaggacgacatggtcatcccggcctccaaggccaaggtggtcgaggagaccgacaagatc
gtcaaggagtacgagcagcagtacaatgacggcctgatcaccttcggcgagaagtacaac
aaggtggttgacgcctgggcgcgttgcgacgaccggctcaccgaggagacgatggccggc
attcaggccgtcgagttcgccgagaacggccgccagaagccgatgaactcgatctggatg
atggcccggtcgggcgcgcgtggctcgacccgccagatgaagcagctcgcgggcatgcgc
ggcctgatggccaagccgtccggcgagatcatcgagacgccgatcatctccaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacccacggtgcccgcaagggtctcgca
gacaccgccctgaagacggccaactcgggctatctgacccgccgcctcgtcgacgtggcg
caggactgcatcatcaccgccgaggattgcggcaccgacaagggcctgaccatgacgccg
atcgtcgatgccggccaggtcgtcgcctcgctcggtcagcgggtgctcggccgcacggtg
ctcgaggacgtggtcaatttgaagaccgacgagatcctcgtgccggccggcacgatggtc
gaggaggcccatgtcgaaaagatcgaggaagccggcatccagtcggtgaagattcgctcg
gcgctgacctgcgagatgcagtcgggcgtgtgcgcggtctgctacggtcgcgacctggct
cgcggaaccccggtcaaccatggcgaggcggtcggcgtgatcgccgcccagtcgatcggc
gaaccgggaacgcagctgaccatgcggaccttccacatgggcggcacggcgcaggtggtc
gacacctccttcgtcgaagcgtcctatgacggcgtggtcgagatcaagaaccgcaacgtg
gtgcgcgactccaccggcaaccttgttgccatgggccgcaacatggcggtgatcatccgc
gacgagaagggcgaggaacgggccacccacaagctgacctacggcgccaagctgatggtc
gacgatggcgaccagatcaagcgcggccagcgtctcgccgagtgggacccctacacccgc
ccgatcatgaccgaggtcgagggcacggtctcgttcgaggatctggtcgacggcatctcg
atccaggaatcggcggacgagaacaccggcatcaccaagcgcgaggtgatcgactggcgg
tccaacccgcgcggcgccgagctcaagccggcgatcaccgtgatgggcaaggacggcgag
gtcgccaagctctcgcgcggcggcgatgcccgcttcatgctgtcggtcgacgcggtgctc
tcggtcgagccgggtgccaaggtcaagcccggcgacgtgatcgcgcgtatcccgatggag
agcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgaactgttcgaggcc
cgtcgcccgaaggatcacgcagtcatcgccgagatcgacggcacgatccgcttcggccgc
gactacaagaacaagcggcgcatctccatcgagccggccgaggagggcgtcgagcctgcg
gaatacctcattccgaagtcccggcctttccaccttcaggatggcgacccgatcgagaag
ggcgactacatcctcgacggcaacccggccccgcacgacattcttgcggtcaagggcgtg
gaggcgctggcatcctatctcgtcaacgagatccaggaggtctaccggctgcagggcgtg
gtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
accgaaccgggtgactcgggctacatcgccggcgacagcgtcgaccggatcgagctcgag
gacgtcaacgaacgcctcgtcgaggaaggcaagcagcccgccagcggcgagccggtcctg
ctcggcatcaccaaggcttcgctgcagaccccgtccttcatctcggcggcgtcgttccag
gagaccaccaaggtgctcaccgaggcctcggtcgccggcaagatcgacacgctgcagggc
ctgaaggaaaacgtcatcgtcgggcgtctcatcccggccggcacgggcggcgcgatgaac
cagatccggcgcatcgccacctcccgcgacgatctgatcctcgatcagcgccgcgccgag
gcggaggccgaagcggccgatgccatgctggaggacatgcgcgaggacgagaacgcaccg
gccgagtaa
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integrated database retrieval system
