Roseitalea porphyridii: E0E05_15140
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Entry
E0E05_15140 CDS
T05862
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rpod
Roseitalea porphyridii
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rpod03016
]
E0E05_15140
Enzymes [BR:
rpod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E0E05_15140
Transfer RNA biogenesis [BR:
rpod03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E0E05_15140
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-ProteinID:
QBK31818
UniProt:
A0A4V1A493
LinkDB
All DBs
Position
3099192..3099857
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AA seq
221 aa
AA seq
DB search
MASGGASGGASGGASGAIRLHRGDLSEDAAARYGDRIAIDTETLGLNPHRDRLCVVQLSP
GDGTADVIQIASGQKRAPNLVRLLRDRKRTKIFHFGRFDIAVLEKAFGVSTQPVFCTKIA
SKLTRTYTDRHGLKDLVRELLDVEISKQQQSSDWAAETLTDAQLAYAASDVLHLHALMDA
LVLRLEREGRTREAEACFRFLPTRARLDLMGWPDEDIFAHS
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggtggggcaagtggtggggctagcggcggtgcaagcggcgcaatcaggctg
cacaggggcgatctgagcgaggacgcggccgcgcgctacggcgaccgcatcgccatcgac
accgaaacgctcgggctcaatccgcaccgcgaccgtctgtgcgtggtccagctttcgccc
ggcgacggcaccgccgacgtgatccagatcgccagcggccagaagcgcgctcccaacctc
gtccggctcctgcgcgaccgcaagaggaccaagatcttccatttcggccggttcgacatc
gccgtgctcgaaaaggccttcggcgtgtcgacccagccggtcttctgcaccaagatcgcc
tccaagctgacccgcacctataccgaccggcacgggctcaaggatctggtccgcgaactg
ctcgatgtcgagatatccaagcagcagcaatcgtccgactgggcggccgagacgctcacc
gacgcgcaactcgcctatgcggccagcgatgtgctgcacctgcacgcgctgatggacgcg
ctggtgttgcggctcgaacgcgaaggacgcacccgcgaggccgaggcctgcttccgcttc
ctgcccacccgcgcccggctcgatctgatgggctggcccgacgaggacatcttcgcgcac
agctga
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