Rhodophyticola porphyridii: ABWH90_01340
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Entry
ABWH90_01340 CDS
T11241
Name
(GenBank) RHS repeat-associated core domain-containing protein
Organism
rpoh Rhodophyticola porphyridii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
K319L-like_PKD
PKD_4
FG-GAP_3
Sde0182_C
Big_9
PKD
He_PIG
FG-GAP
CarboxypepD_reg
Cadherin_5
Motif
Other DBs
NCBI-ProteinID:
XHC06917
LinkDB
All DBs
Position
complement(237612..246953)
Genome browser
AA seq
3113 aa
AA seq
DB search
MRLFCYAILFSILTPLVALADNLTSLGLRGDSTTMWRLQSDASTSQQVTLRRYGGGFETV
FTVDPGRTIVAGAGAGTYIAEFSGSGERITKASGPQPFDACFHFGDCEPVATCGAPTLAV
AALIGQTVRLDPLPLLDVATPDRLAVSWRWSDRPATSVAGFSEATALRPNVTIDVAGTYV
ALADIRNADEGPDAPILQTVEIQVGTGNIAPVAMISGLGTPRDLRTLVLDGSGSTDINGD
SLSYSWSVESRPVGSVAELSNVDAASVSFAFDETGDYAFGLVVEDDSGLRSSLACFSASF
VAADEAPLVYATSFDRTFENDGSPQVEFDLGDVSADATTNRLIESFDVNGGGESSFDTVR
FVFRGNSYSLSSRGDFLDFVSFIEFDGDGTTDAQVSPDPNVRDLTFVFDEAGSAVTLRNV
IGNDLRRDALLNRSADFYEARPERSVAPVAALRFEDRRAAIGETVAFDPYDSTDIDGNPL
SSVIRIVDGPAGSLATMTTTADGIASFAPDVAGDYLVRLVVDDGENASTDYALVVVEGTE
NLTPVARVARPSLATVGQPLVLDATQSYDLDGDLLTYNWAIITQPVASIAELSSTKGPVE
RFTPDVDGLYIAQLTVSDGIDTSQAITLAIDTTDPRPVALAGTDILRPSDQDVALDGQAI
AGPGVVFDWALTGLTESAPNIQASGLGDAAAVLSFGTPDAGGVAQLVVSGAGRVSYPDTV
FIGAGNQRPRLTPQPVLTASVGVDVVLDAAQTASDPNNDALAYTWSLIARPPGSSALLAE
AQVPGTQLSFTPDRTGLFLLQLTGSDGSLDAEPVILALDVVNSAPVAVVPPALTGFVGDT
VVLDGTGSFDPDGNQLFFDWSIVSRPAASTVDLAQPNTMAPEFVPDVRGDYVFSLTVSDG
LAVSAPASLTLSTPNRRPQADIAGPSEATVGETIAISAAASTDPDNDLLEFIFQVTAAPV
GSTADVVADGLGRVLFAPDRQGVFEVSVTVSDGDETASTVLQITATAENAAPVLADILPL
YTVELGLEFALDLVAADPDGDPLGFFAGPLPLPEGVGIDANSGAIRFRPEDGQVGTYVLN
VGVSDGRLTDTATLTIEVVPADAGETAVMGRVLDAVDFANGVDTPLAGIPVRLRDAALIG
VTQADGTFRFGGLTAGTDQVFVEPSADGGPGGYLSTTRVIRITENQERDLAPDFLLAPLN
DGCTTVVAGAETVLSGVASGVTVRIPADTIRDQTGALYSGDVCLGTLPELFETEGFPDGT
QTCRIYSLDATGANFTAGFTVSAPNVDLLPEATELGLWRRSPINGQFLQTAAAGVDLGAS
TVSGVVPRLTGGAQFTFLPQPPITMASTDQTNGNRMATPLNGNLEEIYVLPSYRAFDQDQ
QIALSYHSRAADPTVIVAGDVTITSTSSLPVSLSTRLEIGGLSIADTAEWTPRIRSDGYT
PALVGEEVSIRQSAVFDATGYDSGNYAYDFVAEARYACSTVASSHAADLHVQNRTDSPYG
RGWSIDGLQQLVQAPDGTVSIVDDDEIVVFEPEPTITQFTEEPLEFPARGVQTVLARDYD
GDGDLDVSFGDSGTGSIGFITNFGNRDLRLAEPFVVANPNEVTTGQYTPNLASTAAGDLS
NNGNLDIAYVLQLQDGYGFLSNNGFGEFSNQLLGISTADVSINDVTVADMDNDGFDDIVF
ISASGSGFIARDEVYISYGGPSGRSLVRVVNRSFGDRPLQVIVADIDNDGRKDVAFRTRE
EGVHIAFATGARSYAFVRTALGANPPVFLGDFFDLIDVNQDGLLDVVWSGESAVQLFVND
SGRAFQPAVNLPRPGNFTRYFLFVEDINRDGIEDVLLSAGREIAVLPGNGSGGFAPFEFG
DVPYSATYIDLADVDGDGSLDLVSSGTFVVRVHFSQPSATGNFIPRDGEFSQLSRLPDGG
WERRYTDGTVILFDAAGLQTAEIDTQGNRRDFAYGTNGELLTITDQIGGVTEMVYDENLR
LALIRYPDGRETSFEYEDQTGDLLGITEPEGGTVSFSYDDQGRLVSTTNQNGNTSTYTFD
AVGNMTGGTMPDGSMIAAQVASSLGLVDGLGGVPPQPFVYVAPEDRVTTLTDRNGEVSEV
IVNEFGSIIQITDPLGRITRLIRNDQNLVVRIERPLGSVASGSGATAGADRARQLAPTAL
VRIDELEYDALGNVTRITEAVGTPQERTMRYEYEPEFSNVTRRVDADGFETRYEYDGDGE
VTAIFDPEGGVRRFTYTATGLLASRTDENGNVTLFDYDDRENLTLITYADGSITQMTYDT
AGNITTIAEAVGTPIERRIQRSFDLMNRVLSVEVTGADGVQIDGITTYTYDAVGNLATIT
DETGLVTTMTYDALERLVAVDDPAEGLIQRTYNLAGEITQHISGDGAIHTYDYDAVSRLI
ETIDPEGFIKTFAHDDRDNILSVTDGRAGTTNFAYDPLDRMTTRTDPLGLTIARAYDDRG
NLVALTREDGLIETATYDGLSRRTQVVTPDNTLTYGYDPRGNLTLAADNDSRVTFTYDAR
NRVATTTTDGTVGPQPAVTLTYTYDALDRRIGLTDSLGGTYAYAYDVEDRLTQLTSPWGS
TYDFGYDGEGRRTSLTASIGRSSTMSYQNGLLATLTHVQSGVTLTDLAYDYAPDGQLEQI
VDTRDPARSLTLAYDDLNRVILVSEGVPADQGGVPIPIEDYAYDAEGNRLASHLSGLYDT
NPHNQLLSDDTYTYTYDARGNRISRTDRATGAVETYSYDSQNRLIGWTDGVSVISYAHDA
LDRRIAVTLDGVTESFVHDPWSPYSTIANDVLLDFEDGALVRRWLHGPEVDEPLAYERYA
GTTAGGSGTALELFRNRLGSVILAVSVSTGAVAAEYDYDSFGQRTLVQGTEEVRYGFTAR
EHDALTGLIHYRARAYDPLTGQFLQRDPIGFASGDLNLYAYVENDPYNFTDPSGLVMAAR
AVPLGTGVATGGWFSGIGNALLGLATGIASYMTGSNALDTVLNQSGDGTDDERGIGDNDG
PPLDDDPNIGPPDPLDPTSALLATLAATATISEGNANDRWHLDRHFEGTGIDSNVVREEI
RNELGNLLRQGHLQEPGSQYVGTIQINGQTVEFRARHVPGRGINVGTAFPRAQ
NT seq
9342 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgttctgctacgcaatccttttttcaatcctgaccccgcttgtcgcactggcc
gacaacctgacaagtcttggcctgagaggcgacagcacgacgatgtggcgtctgcagagc
gacgcttccacttcgcagcaagtgactctgcgtcgatatggcggcgggttcgaaacggtg
ttcacggtggatcccggccgcaccatcgtcgccggtgccggtgcaggaacgtatatcgca
gagttttccggcagcggagaacgcatcaccaaagcctccgggccgcaaccctttgatgcc
tgttttcattttggtgactgcgaacccgttgcgacctgcggcgcacccaccctggcggtc
gcggctttgatcggtcaaacggttcggctcgaccctctgccgcttctggacgtggcgacg
ccagatcgattggccgtgtcctggaggtggtccgatcggcccgcgaccagcgtggcaggg
ttttccgaggccaccgcgttgcgtccgaacgttacaatcgatgtagccggcacctatgtc
gctctggcggacatccgcaacgccgacgaggggccggacgcacccatcctgcaaactgtt
gaaatccaggtcggcaccggcaacattgccccggtcgccatgatctcgggcctgggcacg
ccacgtgaccttcgcacactggtcttggatggcagcggcagtactgacatcaacggcgat
agcctgagttattcttggagcgtcgaaagccggccagtcggcagtgttgcggaactcagc
aatgtcgacgccgcgagtgtttctttcgcgtttgatgagacgggcgactacgcctttggc
ctggtcgttgaagatgacagcggtctgcgctccagcctcgcctgtttttcggcttccttc
gtcgccgccgacgaggcacccctagtttatgcaacgagcttcgatcgcaccttcgaaaac
gacggttcgccgcaggtggagttcgacctaggagacgtcagcgccgacgctacgaccaac
cgcctgatcgaaagctttgacgtcaacggtggtggcgaatccagcttcgatacagtcaga
ttcgtctttcgcggcaacagttattcgctcagcagcaggggcgacttccttgattttgtt
agcttcatagaattcgacggcgatggaacgacggacgcgcaagtttcccccgatcccaat
gttcgtgacctcacattcgtttttgatgaagcgggaagtgctgtcacactacgcaacgtg
atcggcaatgatcttcggcgcgatgcgctgctgaaccgcagcgccgatttctacgaagcg
cgccccgagcggtccgttgccccggtggcagcgctgcgattcgaggatcgacgtgccgca
atcggcgaaacggttgcctttgacccgtacgacagcacggatatcgacggcaatccgctc
tcgtccgtcatcaggatcgtcgacggccctgccggcagtctcgcgaccatgaccacgacc
gcggacggtatcgcatccttcgcaccggatgtcgcgggcgactatctggtgcgccttgtc
gtcgatgacggtgagaatgcgtccaccgactacgcgttggtcgtcgttgaggggaccgaa
aatctcacacccgtggcgcgggtcgcccgcccgtcacttgcgaccgtgggccaacccctc
gttcttgatgccacgcagagttacgatctcgatggcgacctactgacctacaactgggcg
atcatcacccaacccgttgcgagtattgcggagttgtcgtcgacaaagggtcccgtggag
cgcttcacgcccgatgtcgatgggctctacatcgcgcaattgaccgtcagtgacggtatc
gacacgtcacaagccatcaccctcgccatcgatacgaccgacccgcgcccggtcgccttg
gctggcacggacatcctcagaccctccgaccaagatgtggcgctcgacggtcaggcgatc
gcggggccgggggttgtatttgactgggccctgaccgggctgaccgaaagcgcgccgaac
attcaggcttccgggctcggcgacgctgccgcggtgttgagttttggcacaccggacgcc
ggcggcgtggctcagcttgtggtcagtggcgccggtcgtgtctcttatcccgacacggta
ttcattggcgcgggcaaccagcgtccccgcttgacgccgcaaccggtcttgacggcgtct
gttggagtcgatgttgtcctggatgcggctcaaactgccagtgatcccaacaacgacgcg
cttgcctacacttggtcgctgattgcgcgcccccccgggagttcggcgttactggcagag
gcgcaggtccccggcactcagttgtcgttcacgcccgatcggaccggcctgttcctattg
caattgaccgggtccgacggctcgcttgatgcagaacccgtgatcttggcactcgatgtc
gtcaattccgctcccgttgccgtggtgccccccgcactcacaggcttcgtaggcgatacg
gttgtcctcgatggcacaggatcattcgaccccgacggcaaccagttgtttttcgattgg
tcaattgtttcgcgacctgccgccagcacggtcgatcttgcgcagcccaataccatggcg
cccgaattcgtcccggatgtccgtggcgattatgtcttttccctcacggtgtcggacggt
ttggcggtctccgctccggccagcctgacgctgagcaccccgaacaggcgtccacaggcc
gacatcgcagggccgagcgaggctacggtcggggaaaccattgcgatttcggcggcagct
tcgactgatcccgataacgatctgcttgagttcatatttcaagtgacggccgccccggtc
gggtcgacggcagatgtcgttgccgatggacttggaagggtcctcttcgcgccggatcga
caaggtgttttcgaagtctctgtaaccgtttccgatggggacgaaacggcaagtacggtt
ctccaaatcaccgcgacagccgagaatgccgcccccgttctcgccgacatcctgcctctc
tataccgtcgaactgggcctcgagttcgcgttggacttggtggccgccgaccctgacggt
gaccctctcggtttctttgcaggaccgttaccgctccccgaaggcgtcggtatcgacgcc
aatagcggcgcgatccggttccggccggaagacggacaggtgggcacctatgtcctcaac
gtcggagtgtccgacggacgcctgacggacaccgcgaccctcacgatcgaggtggtgccc
gccgatgcgggcgaaaccgccgtaatggggcgggttttggatgcggttgactttgcgaat
ggcgtcgatacgccgcttgcgggaattcccgtgcggctgcgcgatgcggcattgatcggc
gtcacgcaggccgatggcacgttccgcttcggaggtttgaccgccggaacggaccaagtc
ttcgtcgagccgtcagctgacgggggcccgggtggctacctgtccacaacccgggtcatt
cgcatcacggagaaccaagaacgtgacctagcgccggacttcctcctcgcgccactcaat
gacggatgcactacggtggtcgcaggcgccgaaacggttttgtcgggtgttgcatcgggc
gtgaccgttcgaattcccgctgatacgatacgcgaccagaccggggcgctatattctggc
gatgtatgcctcggaacgctgcctgagctgttcgagaccgaaggcttccctgacgggacc
caaacttgccgcatctactcgttggatgcaacgggcgccaatttcacggccggtttcacg
gtcagtgcccccaatgtcgacctgctgccggaagcaaccgagctagggctttggcggcgc
agcccgatcaacggccaattcctgcaaaccgccgcggccggtgtcgatctgggcgcttcg
acggtcagcggtgtcgttccacgtctgacaggcggggcccagttcaccttcttgccgcaa
ccgccgatcaccatggcctcgaccgatcagaccaacggcaaccgaatggcgaccccgctc
aacggcaatctggaagaaatctacgttctgccatcctaccgcgcattcgaccaggatcag
cagatcgcactcagctaccattcccgcgccgccgatccgaccgtgatcgtggcgggagac
gtgacgatcacgtcgacgagttcgctgccggtttccctgtccacgcgtctggagatcggt
ggtctttcgatcgccgacacggcggaatggacgccgagaattcggagtgacggctacacg
cccgcattggttggtgaagaggtctctatacgtcagtcggccgtcttcgacgcaacgggg
tatgacagtggcaactacgcctacgacttcgtggccgaggcgcgatatgcctgctcgacc
gtggcttcgtcccacgccgccgacctccatgtgcagaaccggacggatagcccctatggc
cgcggctggtcgatcgacggcctccagcagctggtacaggcgcctgatggaacggtttcc
atcgtagacgacgacgagatcgttgtgttcgaacctgagccgaccattacgcagtttacc
gaagagcctttggagtttccggcccgtggagttcagaccgtgctcgcgcgggattatgat
ggagatggtgatcttgatgtttcgtttggcgatagcggaacggggtcgatcggtttcata
accaatttcggcaaccgcgatctgcgccttgcggagccctttgtcgtggcgaatccgaac
gaggtcacgaccggtcagtatacgcccaacctcgcaagcaccgcggccggagacctttca
aacaacggcaacctcgatatcgcatatgtcctgcagttgcaggacggttacggtttcttg
agcaacaatggttttggcgaattcagcaaccaactattgggtatttccacggccgacgtc
agcatcaatgatgtcacggtcgctgatatggataacgacggtttcgatgatatcgttttc
ataagcgctagcgggagcggttttatcgcgcgcgatgaagtgtacatcagctatggcggt
ccgtccgggcgctcactggtcagagtggtcaatcggtccttcggcgatcgcccgctacag
gtgatcgtcgccgatattgataatgatgggagaaaagatgtcgcgtttcgcacccgggaa
gagggtgtgcacatcgcctttgcgactggtgcccgaagctatgcatttgtgcgaacagca
cttggggctaatcccccggttttcctcggggatttctttgacctcatagacgtcaatcaa
gatggcctcttggacgtcgtttggagtggagagagcgctgttcagctattcgtcaatgat
tctggccgtgcctttcaaccggccgtgaatcttccccgcccgggcaatttcacaaggtat
ttccttttcgttgaagacatcaatcgcgacggcatcgaagacgtcttgctctcggcggga
agggagatcgcggtcttgcccggtaatggcagcgggggttttgctccgtttgagtttggc
gatgtaccttattcggctacctacatcgaccttgccgacgttgacggcgatggaagcctc
gacttggtgtcctccggcacattcgtcgtgcgagttcacttttcccagccgtcggcgact
ggcaacttcatcccacgcgacggcgagttttcgcagctttcccgattgccggacggcggg
tgggaacgccgctacaccgacggcacggtgatcctctttgatgccgcgggccttcaaaca
gccgagatcgacacgcagggcaaccgccgcgacttcgcctatgggaccaacggtgaattg
ctaaccataactgatcagatcggtggtgtcaccgagatggtctacgacgagaacctcaga
cttgccttgatccgttaccccgatggccgggaaacgagcttcgagtacgaggatcaaacc
ggcgacctgctcggcataaccgaacccgaaggcggcacggtcagcttcagctacgatgat
caagggcgtcttgtcagcacgacaaatcagaacggcaacaccagcacatacacattcgat
gcggtcggcaacatgaccggcggaacgatgcccgacggatccatgatcgcagcgcaggtt
gcctcttccttgggcctcgttgatggccttggaggggtgccgccacaaccgtttgtctac
gtagcgcccgaagaccgcgtcacgacactcaccgatcgaaacggtgaggtcagtgaggtc
atcgtcaacgaattcggctccatcatccagatcacggatcctctcggacgcatcacgcgg
ttgatcagaaacgatcagaacctcgtggttcgtatcgaacgcccattgggcagcgttgca
tcgggatccggcgcgacagctggcgctgaccgtgcgcgtcagctcgcgccgaccgctctg
gtccggatcgacgagcttgaatatgatgctctcggaaatgtgacacgcatcaccgaagcc
gtcgggacgccgcaagagcgcacgatgcgctacgagtacgaaccggagttcagcaacgtc
acacgcagggtcgatgccgatggcttcgagacgcgttacgagtacgatggggatggcgag
gtcaccgccatcttcgatcccgagggcggcgtgcggcgttttacctacaccgcaacgggt
cttctggcgtcccgcaccgatgaaaatggcaatgtgaccctgttcgactacgatgatcgc
gagaacctcaccctgatcacctatgccgacgggtcgatcacccagatgacctacgacacc
gccggcaatatcaccaccatcgccgaggccgtgggcacgcccatcgaacgccggatccag
cgcagtttcgatctgatgaaccgggtcctcagcgtcgaggtgaccggggccgacggcgtc
cagatcgacgggataacgacctacacctacgacgccgtcggcaacctggcgacgatcacc
gatgaaacgggcctcgtcaccacgatgacctacgacgcattggaacgtctcgtcgccgtg
gatgaccccgcagagggcctgatccagcgcacctacaacctcgcgggcgagatcacacag
cacatcagcggcgatggtgccatccacacctacgactacgatgcggtcagccgtctgatc
gagacgatcgatcccgagggattcatcaagaccttcgcccatgatgaccgcgacaacatc
ctcagcgtgacggatggccgggccggcaccacgaacttcgcctacgatccgctcgatcgg
atgaccacgcggacggacccgttgggcctgactatcgcgcgggcctatgacgaccgcggc
aacctcgtggcgctcacgcgcgaggacgggctgatcgagacggcaacctacgatggcctt
tcgcgccggacccaggttgtcacacccgacaacacgctgacctacggctatgacccgcgg
ggcaacctcacgctggccgccgacaacgacagccgggtgaccttcacctacgacgcccgc
aatcgtgtcgccaccaccacgacagacggcaccgtcggcccgcagccagcggtcacgctg
acctatacctacgacgcgctcgaccggcggatcggtctgaccgacagcctcggtgggacc
tatgcctatgcctacgatgtcgaggatcgcctgacacaactgacctcgccctgggggtcg
acctacgatttcggctacgacggagaggggcggcgcacctcgctcaccgcctcgatcggc
cgaagctccaccatgagctatcaaaacggcctcctcgccacgctgacccatgtccagtcg
ggcgtcacgctcaccgatctcgcctatgactacgcgcctgacgggcagctggagcagatc
gtcgatacccgcgaccccgcgcggtccttgacgctcgcctatgacgacctgaaccgcgtg
atccttgtgtccgagggcgtgccggccgaccagggcggcgtgccgatcccgatcgaggat
tacgcctatgacgccgagggcaaccgcctcgccagccatctgagcgggctttacgacacg
aacccgcacaaccagctcctctcggacgacacttacacctacacctatgacgcccgcggc
aaccggatcagccggacggaccgggcgacgggcgcggtggagacctacagctacgattcg
cagaaccgcctgatcggctggaccgacggggtctcggtgatctcctacgcccatgacgcg
ctggaccggcggatcgcagtcaccttggatggcgtgacggagagcttcgtccacgacccg
tggagcccctattcgaccatcgccaatgacgtcctgctcgatttcgaggacggggcgctg
gtgcggcgctggctgcacgggcccgaggtggacgagcctctggcctatgagcgctatgcc
gggaccacggcgggcggcagcggcacggcgctggagctgttccggaaccgcctgggctcg
gtgatcctggcggtgtcggtctcgaccggggccgtggcggctgagtacgactatgacagc
ttcgggcagcgcacgcttgtgcagggcacggaggaggtccgctacggcttcaccgcccgc
gagcatgacgcgctcacgggcctgatccactaccgcgcgcgggcgtatgatccgttgacg
ggtcagttcctgcaacgcgatcccatcggcttcgccagcggagacctgaacctctacgcc
tatgtggagaacgacccgtacaacttcaccgacccgagtgggttggtaatggcagcgcgg
gctgttcctcttggtactggcgtcgctactggcggctggttcagcggtatcggaaatgcg
ctgcttggccttgccactgggatcgcaagctacatgaccggctcaaatgccttggacacc
gtgctaaatcagagtggcgatggtaccgacgatgaaagaggcattggcgacaacgatggg
ccgccgctggacgatgatcccaatatcggtcctcctgaccctttggacccaacgtccgcg
cttcttgcgacactggcagccacggctaccatcagcgaaggtaacgccaacgatcgttgg
catcttgatcgccatttcgagggaaccggaattgacagcaacgtcgttcgagaggagatc
cgcaatgagctcggtaatctgcttcggcaaggtcacttgcaagagccaggaagccaatat
gtcggaaccattcaaatcaacgggcagaccgtggaattccgtgcgaggcacgtgcctgga
cgaggtataaatgtcggaacagcgttcccccgcgcccaatag
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