Rhodophyticola porphyridii: ABWH90_07255
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Entry
ABWH90_07255 CDS
T11241
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpoh Rhodophyticola porphyridii
Pathway
rpoh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABWH90_07255 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpoh03400
]
ABWH90_07255 (mfd)
Enzymes [BR:
rpoh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWH90_07255 (mfd)
DNA repair and recombination proteins [BR:
rpoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABWH90_07255 (mfd)
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Other DBs
NCBI-ProteinID:
XHC08022
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Position
complement(1440562..1444029)
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AA seq
1155 aa
AA seq
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MTPNPDHILTGGAPEGFDATLVLRELAAGTGPVCHVARDDKRLAAMARALAFFDPSVPVL
RFPGWDCLPYDRVSPNAEIAASRMATLAALSAGLSGPFIVLTTLSAATQFVPPRALLQDA
AFVATVGGRIDEDALKTFLVRMGFVQSPTVTEPGDYAVRGGIIDVWPPGESTPVRLDLFG
DVLDGARRFDPATQRTTEKMERVELAPVSEVILDEPAITRFRQNYRIEFGAAGTDDPLYE
AVSAGRKHAGVEHWLPFFHERLETLFDYLPKATITLDEQSDAQRLARWESIEDQYDTRKT
ALTQKGRLDSVYKPCPPGQLYLDDAAWDRAIAGHRVVQFSPLPQASGPGTTDAGGRIGRS
FVPERQQENISLFGALADYIQVQREKAAIVIASWSEGARERLAGLLEDQGVVGAVEIADA
RDIAGPGSLNLAVWPLEEGFTGGGLSVISEQDVLGDRLIRPKRKTKRAENYLTEAQSLSP
GDLIVHVDHGVGRYTGLETVTAMGAPHECIALEYAGGDRLFLPVENIELLSRYGHDEGLL
DKLGGGAWQAKKAKLKERIRQIADKLIRIAAERELRSAPVLEPPGDMWEAFAARFPYEET
DDQLTAIADVMEDFAQGRPMDRLIVGDVGFGKTEVAMRAAFVAAASGLQVAVIAPTTLLA
RQHAKTFSDRFRGFPINVRQLSRFVPAREAAETRKGLADGRVDICIGTHALLAKGIRFRN
LGLLVIDEEQRFGVTHKERLKEMRSDVHVLTLSATPIPRTLQMSLSGVRDLSLIGTPPID
RLAIRTYVSEFDSVTLREALLREHYRGGQSFYVVPRIQDLPEIEAFLTDQVPEVSYVVAH
GQMAAGELDDRMNAFYDGKYDVLLATTIVESGIDIPTANTMIIHRADRFGLAQLYQIRGR
VGRAKTRAYAYLTTKPRQKLSQTAEKRLRVLGSLDSLGAGFTIASQDLDIRGAGNIVGEE
QSGHVREVGFELYQSMLEEAIASIRSGAGEARLDEDGQWAPQINLGVPVLIPEAYVPDLD
VRLGLYRRLSQLTTKVELEGFAAELIDRFGKLPREVNTLLLVIRIKAKCKQAGIARLDAG
PKGATIQFHNDKFANPAGLVEFVQDQRGLARIRDNKIVVRRDWTSEADKIKGAFAIARDL
AQKVQVATPPAKTKV
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgaacccggaccatatcctgaccggtggcgcgcccgagggctttgacgccacg
cttgtcctgcgcgaactggcggcgggcaccggccccgtctgccatgtggcgcgggacgac
aaacgccttgcggccatggccagggcgcttgcgttcttcgacccgagcgtaccggtcctg
cgctttccgggctgggattgcctgccctatgacagggtctcgccgaatgccgagatcgcg
gccagccgcatggcgacgcttgccgcgctttccgccgggctgtcggggccgttcatcgtg
cttacgaccctcagcgcggcgacccagttcgttccgccgcgcgcactgttgcaggacgcg
gccttcgtcgccaccgtcggcgggcgcatcgacgaagacgcgctcaagaccttccttgtc
cggatgggcttcgtgcaaagccccacggtgacggagcccggcgactatgcggtccgtggc
ggcatcatcgatgtctggccgcccggagaaagcaccccggtgcgtctggatctcttcggc
gacgttctggacggtgcgcggcggttcgacccggcgacgcagcgcaccaccgagaagatg
gagcgggtggaacttgcgcccgtttccgaagtgatcctcgacgagcccgccatcacccgg
ttccggcagaactaccggatcgagttcggcgcggcgggcaccgacgatccgctttacgaa
gcggtcagcgcgggccgaaaacatgccggcgtggaacactggctgccgtttttccacgag
cggctggaaacgcttttcgactacctgccaaaggccaccatcacactggacgagcaaagc
gatgcgcagcgtcttgcgcggtgggaaagcattgaagatcaatacgatacccgcaagacc
gcattgacccagaaaggccggctcgactcggtctacaagccctgtccgcccgggcagctt
tatctggatgacgcggcatgggaccgggccatcgccgggcaccgggtcgtgcagttttcc
ccgttaccacaggccagcgggcccggcacgacagatgcaggcgggcggatcgggcgcagt
ttcgtgcccgagcgccagcaggaaaacataagccttttcggcgccttggcggattatatt
caggtacaacgtgaaaaggcggcgattgtcatcgcctcttggtccgagggtgcgcgcgag
cggctggccggtcttctggaggatcagggtgtcgtcggcgcggtcgagatcgccgatgcg
cgcgacatcgccgggccgggcagtctcaacctcgcggtctggccgctggaggaggggttc
accggcggcgggctcagcgtgatctcggagcaggatgtgctgggcgaccggctgatccgg
cccaagcgcaagacgaagcgcgccgagaattacctgaccgaagcgcagtcgctgagcccc
ggcgatctgatcgttcatgtcgatcacggggtcggtcgttacactgggcttgaaacggtg
accgccatgggcgcgccccatgagtgcatcgcgctagaatatgccgggggcgaccggctg
ttcctgcccgtcgagaacatcgaattgctgagccgctacggccatgatgaaggcctgctc
gacaagcttggcgggggcgcatggcaggccaagaaagcgaagctgaaggaacgtattcgc
cagatcgccgacaagctgatccgcatcgcggcggaacgggagctacgctcggccccggtt
ctggaaccgccgggcgacatgtgggaggcgttcgccgcccgcttcccctatgaggagacc
gacgaccagctgaccgccatcgccgacgtgatggaggatttcgcccagggccgcccgatg
gaccggctcatcgttggggatgtggggttcggcaagacggaggttgcgatgcgggcggcc
ttcgtcgccgcggcctcgggcctgcaggtggcggtgattgcgccgaccacgcttctggcc
cggcagcacgccaagacattttccgacaggtttcggggtttccccataaatgtcaggcag
ttgtcgcgctttgttccagcgcgtgaagcagcggagacccgcaaggggctggccgatggc
agagtcgatatctgcattggcacccatgcgcttctggccaagggtatccggttccggaac
ctgggcctgttggtgattgacgaggaacagcgctttggcgtgacccacaaggaacggttg
aaggaaatgcgctcggacgtgcatgtgctgaccctctcggccacaccgatcccgcggacg
cttcagatgtcgctctcgggcgtccgcgacctgtcgctgatcggcaccccgcccatcgac
cggctggcgatccgcacctatgtcagcgagttcgatagcgtcaccctgcgcgaggcgctg
cttcgcgagcattatcgcggggggcagagtttctacgtggtcccgcgcattcaggatctg
cccgagatcgaggcgtttctgaccgatcaggtgcccgaggtgtcctatgtcgtggcccat
ggccagatggcggcgggcgagctcgacgaccggatgaatgccttttacgacggcaaatac
gatgtgctgctggccacgaccatcgtcgaaagcgggatcgacattccgacagccaatacg
atgatcatccaccgggccgaccggttcgggctggcgcagctctaccagatacggggccgg
gtgggccgcgccaagacccgcgcctatgcctatctaacgacgaaaccgcgccagaagctg
agccagaccgcagaaaagcggctgcgggttctgggcagcctcgacagccttggggcgggc
ttcacgattgccagccaggatctcgacattcgcggggcgggcaatatcgtgggcgaggag
cagtcgggccatgtccgcgaagtcgggttcgagctttaccagtccatgctggaagaggcg
attgccagtatccgctcgggcgcgggcgaggcgcgcctggacgaggacgggcagtgggcg
ccgcaaatcaatctgggcgtgccggttctgatcccggaggcctatgtgcccgatctggat
gtccggctggggctttaccggcgtctgagccagttgaccacaaaggtggaactggagggc
ttcgccgccgaactgatcgaccggttcggcaagctgccgcgcgaggtgaacaccctgctc
ctggtcatccggatcaaggccaagtgcaaacaggccgggatcgcccggctggacgcgggg
ccaaagggggccacgatccagtttcacaacgacaaattcgccaatccggccggtctggtg
gagttcgtgcaggatcagcgcggcctggccaggatccgtgacaacaagatcgtggtccgg
cgcgactggacaagcgaagccgacaagatcaagggggccttcgcgattgcccgcgatctg
gcccagaaggtgcaggtggcgacgcctcccgccaagaccaaggtctga
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