Rhodophyticola porphyridii: ABWH90_14365
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Entry
ABWH90_14365 CDS
T11241
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rpoh Rhodophyticola porphyridii
Pathway
rpoh03030
DNA replication
rpoh03430
Mismatch repair
rpoh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWH90_14365
03430 Mismatch repair
ABWH90_14365
03440 Homologous recombination
ABWH90_14365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpoh03032
]
ABWH90_14365
03400 DNA repair and recombination proteins [BR:
rpoh03400
]
ABWH90_14365
Enzymes [BR:
rpoh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABWH90_14365
DNA replication proteins [BR:
rpoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABWH90_14365
DNA repair and recombination proteins [BR:
rpoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABWH90_14365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
PAS_4
PAS_9
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
XHC05734
LinkDB
All DBs
Position
2871653..2873644
Genome browser
AA seq
663 aa
AA seq
DB search
MFTHLSLRLRIFLFFALLAVGGSALMIAGLTLGYIRLGEDHALQSFVIAGAIGVLAIFGL
TAWVWVLFDENVARPVERLAADMRARAHADVDLDIDHAPARYLGDLAPAAAAVASNLTET
RNAMAQAIGRETARLGLEKSRLETLLAEVPDGVLFCTPDHCVALYNGQARTVLDNSPALG
LNRSLADVILPGPVHQAYERLLAAEAQEGADILCATKAGAKLLEARMRLMWLDAQETKQP
GYILSLRDVTTDLKIHAERAHLLNSLLDAAKGAVTSKDPSAMEYLVSTTAEVAARKPLTD
TAWWPMEALAATDLGAALSSRLKRKGVPISTDLPALKLRCDGFAVTRLLERLALEWAAAG
ASALKLGFADDTQSTGRLVLSATGAPPDSETLTRWLATPLSPGLAQFAGRDVLVTHATRL
VPDPSGALHLTLPLADPRHRGTARVIQYDFELLHADIPKEIAEAALRQLNYVVFDTETTG
LNPQVDEICQIAAVRIVNGKIVDSERFDMLVDPGRRIPQGSIEVHGVTNEMVKGAPSVAE
ALKRFHAYADGAVLVAHNAPFDMSFLQRRETEIGARFDQPILDTVLCSAILFGQSAEHTL
DALCQRLGITIPEADRHTAIGDAIGTAAAFRKMIPMLEAADLPSLGATIKAFDKHARLIE
HLN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtttacccatctcagtctgcgtttgcgcatattcctgttcttcgcccttctggccgtc
ggcggctccgccctgatgatcgcggggctgacgctcggatacatccgtctgggcgaagac
catgccctgcagagcttcgtgatcgcgggtgccatcggcgtcttggcgattttcgggctg
accgcttgggtctgggttctgttcgatgaaaacgtggcccgcccggtggaaagactggcc
gccgacatgcgggcgagggcccatgccgatgtcgatctggatatcgaccacgcaccggcg
cgttatctgggcgatctggcccctgctgcggcggcggtggcctcgaacctcaccgagacg
cgcaacgccatggcgcaggcgatcggtcgcgagaccgcacggctcggccttgagaaatcg
cggctggaaacacttctggccgaggtgccggatggtgttcttttctgcaccccggatcac
tgcgtggcgctatacaacggccaggcccggacggttctggacaacagcccggccctgggg
ctcaaccggtctctggccgatgtgatcctgccgggcccggtgcatcaggcctatgagcgg
ctgctggccgccgaagcgcaggagggcgcggatattctgtgtgccaccaaggcaggcgca
aagctgcttgaggcgcgcatgcggctgatgtggctcgacgcgcaggaaaccaaacagccg
ggctatattctgagcttgcgggatgtgacgaccgatctgaagatccacgcagagcgcgcc
catctgctgaactcccttcttgatgcggcgaaaggggccgtcaccagcaaggacccgagc
gcgatggagtaccttgtcagcaccacggccgaggtggccgcccgcaaacccctcacggat
accgcatggtggccgatggaagcccttgccgcgacagatctgggcgcggcgctgtcatca
cggctgaaacgcaagggcgtgcccatttccaccgatctgcccgccctgaaactgcgctgc
gacgggttcgcggtgacccggcttctggaacgtctggcgctggaatgggcggcggcgggc
gccagcgcattgaaactcggctttgcggatgacacgcagagcacgggccggcttgtgtta
tcagccacgggcgccccgcccgacagcgaaacgctgacgcgctggctggccacgccgctc
agtccgggtctggcgcagtttgccggccgggacgtgctggtgacgcatgccacgaggctg
gttcccgacccctccggcgcgctccatctgaccctgccgctcgcggatccgcggcaccgc
ggcaccgcacgggtgatccagtatgattttgagcttttgcatgcggatatcccaaaggag
atcgcggaggccgcgctcaggcagttgaactacgtggtgttcgataccgaaaccacgggg
ctgaacccgcaagtggacgagatctgccagatcgccgccgtgcggatcgtgaatggcaag
attgtcgatagcgagcggttcgacatgctggttgacccggggcggcgcattccgcagggc
tcgatcgaggtgcatggcgtgaccaacgaaatggtgaagggcgcgccatcggtcgcagag
gcgttgaaacggtttcacgcctatgcggatggcgcggttcttgtggcccataacgccccc
ttcgacatgagtttccttcagcgccgcgagaccgagataggcgcgcgcttcgatcagccc
attctggatacggtcctgtgttcggcgatcctgttcgggcaatcggccgagcacacgctg
gatgcgctttgccagcggcttggcatcacgatccccgaggccgacaggcatacggcaatc
ggcgacgccatcggcaccgcggcggcctttcgcaagatgatcccgatgctggaagcggca
gatctgcccagtttgggggcaacaatcaaggctttcgacaaacatgcccgcctgatcgag
catctcaattga
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