Rhodophyticola porphyridii: ABWH90_16110
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Entry
ABWH90_16110 CDS
T11241
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
rpoh Rhodophyticola porphyridii
Pathway
rpoh00300
Lysine biosynthesis
rpoh00470
D-Amino acid metabolism
rpoh01100
Metabolic pathways
rpoh01110
Biosynthesis of secondary metabolites
rpoh01120
Microbial metabolism in diverse environments
rpoh01230
Biosynthesis of amino acids
Module
rpoh_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rpoh00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
ABWH90_16110 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
ABWH90_16110 (dapF)
Enzymes [BR:
rpoh01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
ABWH90_16110 (dapF)
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
DUF3558
Motif
Other DBs
NCBI-ProteinID:
XHC06055
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Position
3221324..3222172
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AA seq
282 aa
AA seq
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MKMHGLGNDFVVIDSRRDGAVITPDLAQALADRHRGIGFDQLAIIENDRPPGPLNEGDEP
LPDAERPHLALRFLNADGSVSAACGNATRCIARWVMDTERLSDLRIRTERGLLRAVDAGN
GLTSVNMGQPQLGWREIPLAEDLDTLHLPVEGDPVATGMGNPHCTFFVADAEAVDLEARG
AEMERHPLYPERTNVQFAHLIAPDHLRMRVWERGVGVTLASGSSSCAVAVAAARRGLTGR
AVKITLDGGEITVDWREDGVWMTGPTTHVFTGTITPEFLETL
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcatgggctgggcaacgatttcgtggtgatcgactcacggcgcgacggggcc
gtgatcacaccggatctggcgcaggccctggcggatcggcatcgcggtatcggttttgac
cagctcgccatcatcgaaaacgaccggccgcccggcccgctgaacgagggcgacgagcct
ctgcctgacgcggagaggcctcacctcgcgctccgttttctgaatgcggacggatccgtc
tctgccgcctgcggaaacgcgaccagatgtatcgccagatgggtgatggataccgagcgg
ctttccgatttgaggattcgcaccgaacgcgggctgttgcgcgcggtggatgcgggcaat
gggctgacttccgtcaacatgggccagccgcaactgggctggcgcgagatacctctggcg
gaggatctggacacgctgcacctaccggtggagggcgatccggtcgccaccggcatgggc
aatccgcattgcacctttttcgttgcagacgcggaagcggtcgatctggaagcgcgaggc
gcggaaatggagcgtcacccgctctacccggagcggacgaatgtgcagtttgcccatctg
atcgcacccgatcatctgcggatgcgggtctgggaacggggggtaggggtgacgcttgcc
tcgggctcttcctcctgcgcggtcgcggttgcggccgcgcgccgcgggctgacggggcgc
gcggtgaagatcacccttgatggcggagagatcacggtggactggcgcgaggatggcgtc
tggatgaccggccccacgacacatgtgttcaccggcacgatcacgcctgaatttctggag
acgctctga
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