Rhodophyticola porphyridii: ABWH90_17035
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Entry
ABWH90_17035 CDS
T11241
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rpoh Rhodophyticola porphyridii
Pathway
rpoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH90_17035 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpoh03021
]
ABWH90_17035 (rho)
03019 Messenger RNA biogenesis [BR:
rpoh03019
]
ABWH90_17035 (rho)
Transcription machinery [BR:
rpoh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABWH90_17035 (rho)
Messenger RNA biogenesis [BR:
rpoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABWH90_17035 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
NACHT
AAA_25
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
XHC06229
LinkDB
All DBs
Position
complement(3413038..3414309)
Genome browser
AA seq
423 aa
AA seq
DB search
MTENSLNLADLKAKSPKDLLSMAEELEIENASTMRKGDMMFSILKERAEDGWEISGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPEMIRQHSLRTGDTLEGVINAPRENERYFGLVK
VSKINFEDPAKAKHKIAFDNLTPLYPDERLKMEIEDPTIKDRSARIIDLVSPIGKGQRSL
IVAPPRTGKTVILQNIAHSIEQNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEP
ATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PAMDILKSGTRKEELLVDKGDLQKTYVLRRILNPMGTTDAIEFLISKLKQTKTNAEFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaattccctgaacctggccgatctcaaggccaaatctcccaaagaccttctg
tcgatggccgaggaactggagatcgagaacgcctccaccatgcgcaagggcgacatgatg
ttctcgatcctgaaagagcgggccgaggatggctgggaaatctccggcgacggtgtgctg
gaagttctgcaggacggatttggcttcctgcgctctccggaggcgaactatctgccgggc
ccggacgatatctatgtttcgccggagatgatccgccagcacagccttcgcacgggcgac
acgctggaaggcgtgatcaacgcaccgagggagaacgagcgttatttcgggctggtgaag
gtgagcaagatcaacttcgaagatcctgccaaggcgaaacacaagatcgccttcgacaac
ctgacgccgctttatcccgacgaacgcctgaagatggaaattgaggatccgacgatcaag
gatcgctccgcacggatcatcgacctggtatcgcccatcggcaagggacagcgctcactg
atcgtggcgcccccgcggacggggaaaacggttatcctgcagaacatcgcgcattcgatc
gagcagaaccatccggagtgttatctgatcgtgctgctgatcgacgaacgccccgaagag
gtgacggacatgcagcggagcgtgaagggggaggtcgtttcctccaccttcgacgagccg
gcgacccggcacgtggcggtttccgagatggtgatcgagaaggcgaagcggcttgtggag
cacaagcgggacgtggtgatcttgctcgattccatcacgcgccttggccgcgccttcaac
acggtcgtgccatcctcgggcaaggtcttgacgggtggtgtggatgccaacgccctgcaa
cgcccgaaacgcttcttcggcgctgcgcggaatatcgaggaaggtgggtcgctgaccatt
atcgcgacggcgctgatcgataccggcagccgtatggatgaggtaatcttcgaagagttc
aagggaacaggcaactccgagatcgtgctggaccgcaaggttgcggacaaacgggtgttt
cccgccatggacattctcaaatccggcacacggaaagaggagcttctggtcgacaagggc
gatttgcagaaaacctatgttctgcgccgcatcctgaacccgatgggaacgactgacgcg
atcgagttcctgatctcgaagctgaagcagaccaagacaaacgcggaattcttcgactcg
atgaatacctga
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