Roseobacter ponti: G3256_02835
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Entry
G3256_02835 CDS
T06561
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpon
Roseobacter ponti
Pathway
rpon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G3256_02835 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpon03021
]
G3256_02835 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpon03400
]
G3256_02835 (rpoC)
Enzymes [BR:
rpon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G3256_02835 (rpoC)
Transcription machinery [BR:
rpon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G3256_02835 (rpoC)
DNA repair and recombination proteins [BR:
rpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G3256_02835 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Phage_DsbA
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QJF50175
UniProt:
A0A858SNC2
LinkDB
All DBs
Position
579376..583623
Genome browser
AA seq
1415 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDAFGMDAFT
ANIGAEAIREMLAAIDLEAEAEQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTLEREGMPGEGMVFGSVEEVQHAL
DAGMVHLHSKITARIPQIDENGLEVMKRFETTPGRIRLGALLPLNAKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMLIPDTKWPIVEETRE
LVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGSISASQRNEAGAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMNDCGTETSITAVAAVNDGEVVSSLSERILGRV
VAEDIMRPGTDEVLLAAGTLIDERMADAVEEAGVASARIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASHSGKVVFDNAS
TLENASGEIMVMGRNMKLIIQDENGEERASHKVGYGTKLFVTDGQDVKRGDKLFEWDPYT
LPIIAEKSGTAKFVDLVSGIAVRDETDDATGMTQKIVIDWRAAPKGNELKPEIILVDGDG
EPVRNDAGNPVTYPMSVDAVLSIEDGAEIQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRYGKDYKNKRRIAIESAEDPDTKVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGDTTLLKGEHVDKQEFDQANEKALAKGGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATMKVRRVAQDRDNVVIEARRE
EAEAAAALAAPSADDDMVGGDVFDQVIPADEDSRD
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgttcaaccctctcacgccgcccaaggtattcgac
gagatcaaagtctcgctcgcatcgcctgagcgcattctgagctggtctttcggggagatc
aaaaagcccgagaccatcaactaccggacgttcaagcctgagcgggacggtcttttctgt
gcgcgtatctttggcccgatcaaagactacgaatgtctctgcggcaaatacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggtgtggaagtcacgctgcagaaggtacgc
cgcgagcgcatgggccacattgagctggcctcgcccgttgcccacatctggttcctgaaa
tcgctgccgtcgcgcatcggtctgatgctggacatgacgctgcgtgatctggagcgggtt
ctctatttcgaaaactatgtggtgatcgagccgggcctcacagacctcacctacggtcag
atgatgaccgaagaagagtatatggatgctcaggatgccttcggcatggacgctttcact
gccaacatcggtgctgaagcgatccgcgaaatgctggccgcaattgatcttgaggccgaa
gcagagcaactgcgtgcggacctcaaagaggccacaggtgagctcaagcccaagaagatc
atcaaacgcctgaaggtggttgagtccttcctggaatccggaaaccgtccggagtggatg
gtgctgacggtgatccccgtgatcccgccggaactgcgcccgctggtgccgctggatggc
ggtcgctttgcgacgtctgacctcaacgatctctaccgtcgcgtgatcaaccgcaacaac
cgtctgaagcgtctgattgagctgcgcgcgcccgatatcatcgtgcgtaacgaaaagcgg
atgctgcaggaatctgtggatgcgctctttgacaacggccgtcgtggccgcgtgatcacc
ggtgccaacaagcgtccgctgaaatcgctctccgacatgctgaaaggcaaacagggtcgt
ttccgtcagaaccttctgggaaaacgcgtcgacttctcgggccgttcggttatcgtgacc
ggtccggaactgaaactacatcagtgtggtctgcccaaaaagatggcgctcgaactcttc
aagccgttcatctattctcgcctcgaggccaaaggtctctccagcaccgtgaaacaggcc
aagaaactggttgaaaaagaacggcccgaggtctgggatattctggatgaagtgatccgt
gaacatccggtgatgctgaaccgtgcacctacattgcaccgtcttggcattcaggcgttc
gaacccgtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgttcggcattt
aacgccgacttcgacggtgaccagatggccgtgcacgtgccgctgtcgcttgaagctcag
cttgaagcgcgcgttctgatgatgtccacgaacaacgttctgtcgcctgcaaacggcgca
ccgatcatcgtgccgtcgcaggatatgatccttggtctctactataccacactggagcgt
gagggcatgccgggtgaaggcatggtattcggctccgtcgaggaagttcagcacgcgctg
gatgccggcatggtgcacctgcactcaaagatcacggcccggatcccgcagatcgacgaa
aacggtcttgaggtcatgaagcggtttgaaacgacgcccgggcggatccgtcttggcgcg
ctgctgccgctgaatgccaaggcaccgttcgagctggtcaaccgcctgctgcgtaagaaa
gaagtgcagcaggttatcgataccgtttaccggtactgcggtcagaaagagtctgtcatt
ttctgtgatcagatcatgacaatgggcttccgtgaagcgttcaaggccgggatttccttc
ggcaaggacgacatgctgatccccgataccaaatggccgatcgtcgaagagacgcgcgag
ctggtaaaggatttcgagcagcagtacatggacggtctgatcactcagggcgagaagtac
aacaaagtggtcgatgcctggtcgaagtgtaacgacaaggtcaccgacgcgatgatgggc
tcaatctctgccagccagcgcaacgaggccggtgctgaaatggaaccgaactcggtctac
atgatggcgcactccggtgcgcggggctcggtgacgcagatgaaacagctcggcgggatg
cgcggcctgatggccaagccgaacggcgacatcatcgaaacaccgatcatctcgaacttc
aaagaaggtctgaccgttctggagtacttcaactccacccacggtgcccgtaagggtctg
tcggataccgctcttaaaacggcgaactcaggttacctgacacgtcgtctggtggacgtc
gcacaggactgcatcgtgcgcatgaacgactgtggcacagagacgtcgatcacggccgtg
gccgcggtcaatgatggtgaggttgtttcttcgctgtccgagcgcattctgggtcgtgtg
gtcgcggaagacatcatgcgtccgggcacggatgaggtgctgctcgctgccggcactctc
atcgatgagcggatggcggatgctgtggaagaggccggtgtggcctccgcgcggatccgc
agcccgctgacctgtgaggccgaagagggcgtctgcgccatgtgctacggtcgtgacctt
gcacgcggtacaatggtcaacaccggtgaagctgtcggcattattgccgcgcagtcgatc
ggtgagcccggtacacagctgacgatgcggacattccacatcggcggcgtggcccagggt
ggtcagcagtcgttcctggaggccagccattccggcaaggtcgtctttgacaacgcctcg
acccttgagaacgcctccggcgagatcatggtgatgggccggaacatgaagctgatcatt
caggacgagaacggcgaggaacgtgccagccacaaggtcggttacggcaccaagctcttt
gtgaccgatggccaggacgtgaaacgcggcgacaagctctttgagtgggatccctatacg
ctgccgatcatcgcggagaaatccggtacggctaagtttgttgaccttgtcagcggcatc
gcggtgcgggacgagaccgacgatgcaaccggtatgacacagaagatcgtcatcgactgg
cgtgcagcccccaaaggcaacgagctcaagccggagatcattctggtggatggcgatggt
gagcctgtgcgcaacgatgcgggcaaccctgtgacctatccgatgtctgtggatgcggtt
ctctccattgaggatggcgccgagatccaggccggtgacgttgttgcgcggatcccgcgt
gaaggcgccaagaccaaggacatcaccggtggtctgccgcgtgtggccgaactctttgag
gcacgtcgtcccaaagatcacgccattatcgccgaaatcgacggctatgtgcgttacggt
aaggattacaaaaacaagcgccgtatcgcgattgagtccgccgaagatccggacacaaag
gtcgaatacatggtgcccaagggcaaacacattcccgtcgcggaaggtgattttgtccag
aagggcgattacatcatggacggcaatccggcaccgcatgacattctggccattatgggt
gtcgaagcgctggcggattacatgatcgacgaggtgcaggacgtctaccgcctgcagggt
gttaagatcaacgacaagcacatcgaggtcatcgtgcgtcagatgctgcagaagtgggag
atccaggactccggtgacacgacgctgctgaaaggtgaacacgtcgataagcaggagttt
gatcaggccaatgaaaaggcactggccaaaggcggacgtcctgcacagggcgagcctatt
ctcctgggcatcaccaaggcgtcgcttcagacccgcagctttatctcggcggcctccttc
caggagaccacccgggttcttaccgaagcctcggtgcagggtaagaaagacaagcttgtc
ggtctgaaagagaacgtcatcgtgggccgtctgatcccggccggcaccggtggtgcgacc
atgaaggtccgccgcgtggcgcaggatcgcgacaatgtcgtgatcgaagcgcgccgcgag
gaggccgaagcggccgccgctctggcagctccctcagcggatgatgacatggtcggtggc
gatgtcttcgaccaggtgatcccggcagacgaagacagccgcgactga
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integrated database retrieval system
