Roseobacter ponti: G3256_09080
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Entry
G3256_09080 CDS
T06561
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpon
Roseobacter ponti
Pathway
rpon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3256_09080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpon03400
]
G3256_09080 (mfd)
Enzymes [BR:
rpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3256_09080 (mfd)
DNA repair and recombination proteins [BR:
rpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3256_09080 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_30
SecA_DEAD
AAA_16
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QJF51302
UniProt:
A0A858SU15
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All DBs
Position
complement(1902027..1905494)
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AA seq
1155 aa
AA seq
DB search
MAEHSHITVSGVPEGFDARFLLTELARGDGPLVHVARDDKRLAAMQAALRFFAPDLPVVV
FPGWDCLPYDRVSPNADISAQRMATLAALAHGMPDRFILLTTLNAATQRVPARAVLKDAA
FTARVGSRIDEKALRDFLVRMGFVQSPTVTEPGDYAIRGGIIDIYPPGDLGPVRLDLFGD
TLDGVRRFDAATQRTTEKLDVVELAPVSEVILDEAGITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHQGAEHWLAFFHEELETLFDYLPEATVTLDDQTTATRLARWESIADQYETRRLA
MAHRSGMDTVYKPAPPEGLYLDDAAWETRMTDRRVLHLSALPQATGPGVTDAGGRMGRNF
APERQQESLSLFGALADHINAKMKNGPVLVASYSEGARERLAGLIEDEGLAEAILIRDGT
RIGRRGLHLAVWSLESGFEAPDGLTVISEQDVLGDRLIRTTRKKRRAENFLTETQSLSPG
DLIVHVDHGIGRYMGLEVVTAAGAAHECLLLEYAEDAKLYLPVENIELLSRYGHEEGLLD
RLGGGAWQAKKARLKERIREIADKLIRVAAERALRKAPVLEPPPGMWDAFSARFPYTETD
DQLRAIGEVIDDMTSGNPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVAVIAPTTLLAR
QHYKSFAERFRGFPIEVRQLSRFVSAKDAQATREAMSRGTVDIVIGTHALLAKGIRFKNL
GLLVIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDR
LAIRTYVSEFDSVTIREALLREHYRGGQSFFVVPRISDLPGIEEFLKEQLPELTYVVAHG
QMPAGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRV
GRSKTRAYAYLTTKPRARLTPTAEKRLRVLSSLDTLGAGFTLASQDLDIRGAGNLLGEEQ
SGQMRDVGFELYQSMLEEAIAKIRAGEMEGLSEADDQWAPQINLGVPVLIPEEYVPDLDV
RLGLYRRLSSLTTKVELEGFAAELIDRFGKLPREVSTLMLVVRIKAMCKKAGIARLDGGP
RGATIQFHNDKFASPEGLVEFIQDQRGLAKVKDNRIVVRRDWKADADKIKGAFAIARDLA
EKVVARKKREKSKAG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcattcccatattaccgtctccggcgtccccgaggggtttgacgcgcgcttc
ctgctgacggaacttgcgcgcggcgacggcccgctggtgcatgtcgcgcgcgatgacaaa
cggctggccgcgatgcaggccgccctgcggtttttcgcccccgatctgccggttgtggtg
tttcccgggtgggactgtctgccctatgaccgggtctcgcccaatgccgatatctccgca
cagcgcatggccacgctcgcagcactcgcccatggcatgccggaccggtttatcctgctg
accaccctgaatgccgcaacccagcgggtgcccgcgcgcgccgtcctgaaagacgccgcc
ttcaccgcccgggtcggcagccgcatcgacgaaaaggccctgcgcgattttctggtgcgc
atgggttttgtgcaaagccccacagtcactgagcctggtgactacgcgatccgcggcggc
atcatcgacatctatcctccgggggatctggggccggtgcggctcgatcttttcggcgac
acgctcgacggtgtccgccgtttcgatgctgccacccagcgcacgacggaaaagctggat
gttgtcgagcttgccccggtttccgaggtgatccttgatgaggccggcatcacccggttc
cgccagaattaccgcatcgaattcggcgccgccggcaccgatgatccgctgtatgaagca
gtaagtgccggtcgcaaacatcagggtgccgagcactggctcgcgtttttccacgaggaa
ctggaaacgcttttcgactatctgcctgaagccactgtaacgctggatgatcagaccacc
gccacgcggcttgcccgctgggaaagcattgccgatcagtacgaaacacgccgcctcgcg
atggcccatcgctccggcatggacaccgtttacaaacctgcaccgcccgaagggctctat
cttgatgacgccgcctgggagacgcggatgacagaccgccgcgtgctgcatctgagtgcg
ctgccgcaggcgacagggcccggtgttaccgatgcgggcggtcgcatggggcgcaacttc
gcgcctgaacgtcagcaggaatctctgagccttttcggggctctggccgatcatattaat
gcaaagatgaaaaacggccccgttcttgttgccagctattccgaaggcgcgcgcgaacgc
ctggccgggcttatcgaggacgagggtctggccgaagccatcctgatccgcgatggcaca
cgcatcggcaggcgcgggctgcatctggccgtctggtcgctcgaaagcggttttgaagcg
cccgacgggctcaccgtgatttccgagcaggacgtgctgggcgaccggctcattcgcacc
acgcgtaaaaaacgccgcgccgagaacttcctgacagaaacgcaatcgctcagccccggc
gatcttattgtgcatgtggaccatggcattggtcgttatatggggctggaggtcgtgacg
gcggcaggggcagcgcacgaatgtctgctgctggaatatgcagaagatgccaagctttat
ctgccggtcgagaacatcgaactgctctcccggtacggacatgaagaggggctgctcgac
cggctgggcggcggggcatggcaggccaagaaagcccgccttaaagagcgtatccgcgag
attgccgacaagcttatccgtgtggccgctgaacgtgcgctgcgcaaggcgccggtgctc
gagccaccccccggcatgtgggacgcattctcagcgcgcttcccttataccgaaaccgac
gaccagctgcgcgccatcggtgaggtcattgacgatatgacctccggcaacccgatggac
cggctggtctgcggggatgtggggttcggtaagaccgaagtggccatgcgcgcagccttc
gtggcggccatgtccggtgtgcaggtggcggttattgcgcccacgacgctgctggcgcga
cagcattacaagagctttgccgagcgcttccggggctttcctatcgaggtccgccagctc
agccggttcgtctccgcaaaggacgcgcaagccacccgcgaggcaatgtcgcgcggcacc
gttgatattgtgatcggcacccatgcgctgctcgccaaaggcatccggttcaaaaacctc
ggcctgctggtcatcgacgaggaacagcatttcggtgtcacgcacaaagagcgactgaaa
cagctgcgcacggatatccacgtgctgacacttactgccacacctattccgcgcaccctg
cagctcagcctgacgggcgtgcgcgatctgagcatcatcggcacgcccccggtcgatcgc
ctcgccatccgcacctatgtcagcgagtttgacagcgtgaccattcgcgaagccctgctg
cgcgagcactaccggggcgggcagtcattttttgttgttccgcgaatctccgatctgccc
gggatcgaggagttcctgaaagaacagctgccggaactcacgtatgtcgtggcgcacggc
cagatgccggcgggcgagctcgacgaccggatgaatgcgttttacgacggcaaatttgac
gtcctgctggccacgacgattgtggaatccggcctcgatatccccactgccaatacgatg
gttgtgcaccgggcggacatgtttggtctcgcacagctttatcagatcagaggtcgggtc
ggacgctccaaaacccgcgcctatgcctatctgacgacaaaaccccgtgcgcgactgacg
ccgaccgcggaaaagcggctgcgggtgctgtccagcctcgatacgctgggcgccgggttt
acgctggccagccaggatctcgacatccgtggtgccggcaacctgctgggggaagaacag
tccggacagatgcgcgatgtgggctttgagctttaccagtcgatgctggaagaggcgatt
gccaagatccgcgcgggcgagatggaagggctgagcgaggccgatgaccagtgggcgccg
cagatcaatctcggggtaccggtgctcattcccgaggagtatgtgcctgatctcgacgtg
cgtctcggcctctatcgccgcctcagcagcctgacgacaaaggtggagcttgagggcttt
gccgccgagctcatcgaccggttcggcaagctgccgcgcgaggtctcgaccctgatgctt
gtcgtgcggatcaaagccatgtgcaaaaaggccggcatcgcgcggctcgacggtggtccg
cgcggggcgacgatccagtttcacaacgacaaatttgcctcacccgaggggttggtggaa
ttcattcaggatcagcgcgggctggcgaaggtcaaagacaacaggatcgtcgtccgccgc
gactggaaggccgatgccgacaagatcaaaggcgcttttgcgattgcgcgggatctggcg
gaaaaagtcgtcgcccgcaaaaagcgcgagaaaagcaaagccggctga
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