KEGG   Roseobacter ponti: G3256_09120
Entry
G3256_09120       CDS       T06561                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
rpon  Roseobacter ponti
Pathway
rpon02024  Quorum sensing
rpon03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rpon00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    G3256_09120 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    G3256_09120 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rpon03019]
    G3256_09120 (hfq)
   03036 Chromosome and associated proteins [BR:rpon03036]
    G3256_09120 (hfq)
Messenger RNA biogenesis [BR:rpon03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     G3256_09120 (hfq)
Chromosome and associated proteins [BR:rpon03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    G3256_09120 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM AcMNPV_AC11
Other DBs
NCBI-ProteinID: QJF51310
UniProt: A0A858SSL5
LinkDB
Position
complement(1913234..1913473)
AA seq 79 aa
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPSQPISLYEGEDAS
NT seq 240 nt   +upstreamnt  +downstreamnt
atggcgtcggacagacagaaccttcaggatgcgttcctgaaccacgtgcgcaaaactaaa
gtcccggtgacgatcttcctgatcaacggggtgaaactgcagggtgtaattacctggttt
gataatttctgtgtgcttttgcgcagggatggacagtcgcaactggtgtataaacatgcc
atttcgacaattatgcccagccagccgatcagcctttatgagggcgaagacgcttcttga

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