Roseobacter ponti: G3256_15560
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Entry
G3256_15560 CDS
T06561
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpon
Roseobacter ponti
Pathway
rpon03030
DNA replication
rpon03430
Mismatch repair
rpon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3256_15560 (dnaE)
03430 Mismatch repair
G3256_15560 (dnaE)
03440 Homologous recombination
G3256_15560 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpon03032
]
G3256_15560 (dnaE)
03400 DNA repair and recombination proteins [BR:
rpon03400
]
G3256_15560 (dnaE)
Enzymes [BR:
rpon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
G3256_15560 (dnaE)
DNA replication proteins [BR:
rpon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
G3256_15560 (dnaE)
DNA repair and recombination proteins [BR:
rpon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
G3256_15560 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
QJF52487
UniProt:
A0A858SWS6
LinkDB
All DBs
Position
complement(3261736..3265236)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSTDPRFIHLRTHSEYSLLEGALRLKKLPALCRKAGMPAMALTDTNNMFAALEFSVAMSD
AGVQPVIGCQTDLAYVVTGPGEKPAAPAPLVLLAQSEAGYENLMKLNSCLYIDKRGQLPQ
VTLDELRSHAGDVICLTGGPDGPVGRLLQAGQRPAAEKLMTELKQAFGDRLYVELQRHPG
EDGQPAAERLTERGLVEMAYAMDLPLVATNDVYFPDAKMYEAHDALICIADGAYVDQQDP
RRRLTAQHYFKSQSEMVALFADLPEAIENTVEIAKRCAFQAYRRDPILPKFADDEVQELR
RQAEAGLKDRLAVIPHATTVEEYEKRLDFELGIIEGMGFPGYFLIVADFIKWAKDEDIPV
GPGRGSGAGSLVAYALTITDLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QDKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA
DEPRLREEARNEEVVARLLEYGQQVEGLLRNASTHAAGVVIGDRPLDHLVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKASGRHLHIAADGTELFAPPEGLT
DDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGQKELESIHPLIDDILKETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIAEEMAKERPKFEKGAMENGVDKKKATEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKQLELPWVPPCVNRSDATFRVEDGA
LVYALGALKNVGVEAMRLIVEARGPKPFATLYDLARRVDLKRVGKRPLEMLARSGAFDQL
DSNRRRVYGALDALVGYSAAIHEQKASNQVSLFGEAGEDLPEPRLQPVDDWLPAERLAEE
FKAVGFYLSGHPLDDYMGPLKRKNVLTLDEILEKAARGPLNAKIAGIVAGRQERKSARGN
RFAFCQMSDTTGAYEVTLFSEALEKFREHLETGSKVVVGVEATLEADQLKLLARSVTPID
TVAADAGGMGLRVFVEHPDAVASVASVLAGAAKAARGAGRGPVQLCLMDPSLPGEVEVDL
GQEFAVNPQIKGAIKSLQGVLEVEDI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgatccccgattcattcacctgcgcacccattccgaatactcgctgctggaa
ggggcgctgcggctgaaaaagctgcccgcgctgtgtcgaaaagccggcatgcctgcaatg
gcgctgaccgataccaacaacatgtttgccgcgctggagttttccgtggcgatgtcagat
gccggcgtccagcctgttatcggctgtcagaccgaccttgcctatgtggtaacgggcccg
ggtgaaaaaccggcagcccccgcgcccctggtgctgctcgcgcagtcagaggccggctat
gaaaacctgatgaagctgaactcgtgcctttatatcgacaagcgcgggcagctgccacag
gtcacgctggacgaactccggtcacatgcgggcgacgtgatctgtctgaccggcggacca
gacgggccggtgggccgtttgctgcaggccggtcagcgtccggcggctgagaagctgatg
acagagcttaagcaggctttcggcgaccggttatatgtcgagttgcaacgccatcccggc
gaagacggccagccggccgccgagcgcttgacagaacgcggccttgtcgagatggcctat
gcgatggatttgccactggtggccaccaacgacgtctatttccccgatgcgaaaatgtat
gaggcgcatgatgcgctgatctgcatcgcagacggcgcctatgtggaccagcaggatccg
cgccggcggctgacggcacagcattacttcaagtcacagtcagagatggtggcgcttttt
gctgatctgccggaggccatcgaaaacacggttgaaatcgcaaagcgttgcgcctttcag
gcatatcgccgggatccgatcctgccgaagtttgccgatgatgaggtgcaggaactgcgc
cgccaggctgaggccggactgaaagacaggctcgccgttatcccccatgccaccaccgtc
gaagaatacgaaaaacgtctcgatttcgagcttggcatcatcgagggcatgggcttcccg
ggttatttcctgatcgttgccgacttcatcaaatgggccaaggacgaagacatccccgta
ggacccggccggggctcgggtgccggcagtctggtggcctatgcgctgaccatcaccgat
ctcgatccgctgcgctacaatctgctttttgagcggtttctgaaccccgaacgggtctcc
atgccggattttgacatcgacttctgcatggaccggcgcgaagaggttatccgctacgtt
caggacaaatacggccgcgataaagtggggcagatcatcaccttcggcgcgctgctgtcc
aaagccgccgtgcgcgatatcggccgtgtgctgcagatgccttacggccaggtggaccgg
ctgtcgaaaatgatccctgtcgaaggtgtgaaacccgtcagcatcgaaaaggcgctggcc
gacgaaccgcgcctgcgcgaggaagcgcgcaacgaagaggtcgtcgcccgcctgctggaa
tacggccagcaggtcgaggggctgctgcgcaacgcctcgacccatgccgccggtgtggtg
atcggtgaccgcccgctggatcatctggtgccgctctatcaggatccgcgctctgacatg
ccggccacccagttcaacatgaaatgggtggagcaggcggggttggtgaaattcgacttt
ctcgggctgaaaacgctgacggtcatccagaacgcggtggaccagatcaaagcctcgggg
cggcatctgcatatcgccgctgacggcactgagcttttcgcgccgcctgaaggtctgacg
gatgatatcgccaccattccgctggatgacgaggcctcctacaaactatatgccagcgcc
aaaacggtcgcggtcttccaggtggagagctccggcatgatggatgcgctcaagcgcatg
aaaccaacctgcattgaggatatcgtggcccttgtggcgctttatcgccccggtccgatg
gagaacatcccgacctactgcgaagtgaagaacggccagaaagaactggaatccatccac
ccgctgatcgacgatattcttaaggaaacgcaaggcattatcgtctatcaggaacaggtg
atgcagatcgctcaggtcatggccggctacagccttggcggggcggatctgctgcgccgc
gcgatgggtaaaaagatcgcagaagagatggccaaagaacgccccaaattcgaaaaaggc
gcgatggaaaacggggtcgataagaagaaagcgaccgaagttttcgaccttctggagaaa
ttcgctaactacggcttcaacaaatcccacgcggcggcctatgcggtggtcagctatcag
acggcctggctcaaggccaaccatcccgtcgaatttatggccggggtgatgaactgcgat
atccacctcacggacaagctggcggtctatttcgaagaggtgcgcaaacagctcgaactg
ccatgggtgccgccctgcgtgaaccgctcggatgcgaccttcagggtcgaagacggcgcc
ctggtctatgcgcttggtgcgctgaaaaacgtaggcgtcgaggccatgcggctgatcgtc
gaagcgcgcggccccaaaccctttgccacgctctatgatctcgcccgacgggtcgatctc
aaacgggtgggcaagcggccgctggagatgctcgcccgctccggcgcctttgatcagctc
gacagtaaccgccggcgtgtctacggcgcgcttgacgctctggtggggtattcggcggcg
atccacgagcagaaagcctcaaaccaggtctctcttttcggagaagccggcgaggatctg
cccgagccgcgtctgcagcccgtggatgactggctgccggcggaacggctggccgaagag
ttcaaagcggtgggcttttatctctcgggccacccgctcgacgactatatggggccgctg
aaacgcaagaacgtgctgaccctggatgaaatccttgaaaaggccgcgcgcggtccgctc
aacgccaagatcgcgggcatcgtggccgggcgacaggagcgcaaatcggcacgcggcaac
cgttttgcattttgccagatgtccgacaccacgggcgcctatgaggtcacgcttttctcc
gaagcacttgagaaattccgcgagcatctggagaccggatcaaaggtcgtcgtcggtgtc
gaggcaactctggaggcggatcagctcaagcttctcgcgcgttctgtcacgccgattgat
acggtggcagccgacgccggcggcatgggtctgcgggttttcgtggaacaccccgacgcg
gtggcctcggtcgccagcgtgctggcaggggccgccaaagccgcccgtggtgccgggcgc
gggcccgtgcagctttgcctgatggatccctcactgcccggcgaggtcgaggtcgatctc
ggccaggagtttgctgtcaatccacagatcaaaggggcgatcaaatcgcttcagggcgtg
ctcgaggtcgaggatatctga
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