Roseobacter ponti: G3256_17110
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Entry
G3256_17110 CDS
T06561
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpon
Roseobacter ponti
Pathway
rpon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3256_17110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpon03019
]
G3256_17110
03009 Ribosome biogenesis [BR:
rpon03009
]
G3256_17110
Enzymes [BR:
rpon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3256_17110
Messenger RNA biogenesis [BR:
rpon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3256_17110
Ribosome biogenesis [BR:
rpon03009
]
Prokaryotic type
rRNA helicases
G3256_17110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJF52768
UniProt:
A0A858SXN2
LinkDB
All DBs
Position
3574814..3576991
Genome browser
AA seq
725 aa
AA seq
DB search
MIETLSQALTRQGYDTLTPVQEAVTDPALTDADLLVSAQTGSGKTVGFGLAIAPTLLGDK
THFGPAGAPLALVIAPTRELAMQVRRELTWLYADAGAEVTSCVGGMDQRSERRALDRGAH
VVVATPGRLCDHIKRGNIDLSEIRAVVLDEADEMLDLGFREELEFILSEAPDTRRTLLFS
ATVPAAIAKLAKSYQKDAQRITTQGEARQHADITYRGLTVHPRDAENAIINVLRYYEARN
AIVFCNTRAAVARLTARLSNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAAR
GIDLPDLELVIHADLPTNADTLLHRSGRTGRAGRKGVSALIVPPKMRTKAHRLVGWAKLQ
EVEWAAAPTAAEVRERDEARLLEDPAWSEPVPEDAQELVTTLAARFSPEQLAAAFVNLRQ
AKQSAPEELTDPDVPDDRPRKTFGPSVWFTVTMGRDQGAEPRRLLPLICRRGDLTKDDIG
AIRIRDDASFIEVLASRADALEAAVGPEMTLEDGVTLARADGPPADTRGTGRPGGKPGGP
PRGRPAGRPAGAKPRKPRDESPGFHPDAAPAPAPAPKADRAPHKPAAAPKADRKPHKPAA
AQKGKKPPKSHKTERSPMKPGAAPKPKSDRAPQAERSKAPRAKAVWTKENREAAKTARSE
RTGADAPDTGRKPRKPSGKPGKPAAAPDKTASNKRAADTSKRFVPPHKRGQKQQRGPSAT
PRRKP
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgatagaaacactctcccaggccctgacccgacagggttatgatacgctgacgcccgtt
caggaggctgtcaccgaccccgcgctgaccgatgccgatctgctggtttctgcccagaca
ggctcaggcaaaaccgtgggcttcgggctcgccatcgcgcccacgctgctgggcgacaaa
acacatttcggccccgcgggcgcgcccctggcgctggtcatcgcacccacgcgcgagctt
gccatgcaggtccgccgcgagctgacctggctttacgcggatgccggtgccgaggtgacc
tcctgcgtcggcggcatggaccagcgcagcgaacggcgtgcgctcgatcgtggcgcgcat
gtggttgtggccacgcccgggcggctctgtgatcacatcaaacgcggcaacattgacctg
tcggaaatccgcgccgtggtgctggatgaggctgacgaaatgctagatctgggctttcgc
gaggagctggaatttatcctctccgaggcgcccgatacccgccgcaccctgctcttttcc
gcgactgtgccggcggccatcgcgaaactcgccaaaagctatcagaaagacgcgcagcgg
atcaccacccagggcgaggcgcgccagcacgccgatatcacctatcgcggtctgaccgtg
catccgcgcgacgccgaaaacgcgatcatcaacgtgctgcgctattacgaggcgcgcaat
gcgatcgttttctgcaacacccgtgcggcggtcgcgcgtctgaccgcgcgtctgagcaac
cgtggcttttctgtcgtggcgctctcaggcgagctgacacaatccgagcgcagcaatgcg
ctgcaggccctgcgcgacgggcgcgcgcgggtctgcgtggccactgatgtcgcggcgcgc
ggcatcgatctgcccgatctggagctggtcattcatgccgatctgcccacgaatgccgat
accctgctgcaccgttccgggcgcaccgggcgcgcgggccgcaaaggcgtctccgccctg
atcgtgccgccgaaaatgcgtaccaaagcgcatcgccttgtgggctgggcaaagctgcag
gaggtcgaatgggccgccgcccccaccgccgccgaggtgcgcgaacgggatgaagcccgg
ctgctggaagaccccgcctggtcagagcccgtgcccgaagacgcgcaggagcttgtgaca
acgctggccgcgcggttcagcccggagcagctggccgcggctttcgtgaacctgcgccag
gcaaaacagtccgcgcccgaagagctgaccgacccggatgtccctgacgaccggccgcgc
aagaccttcggaccgtcggtctggttcacggtcaccatgggccgcgatcagggcgcggag
ccgcgccgtctgctgccgctcatctgccgtcgcggcgatctgaccaaagacgacatcggt
gcgatccgcatccgcgatgacgcgagctttatcgaagtgctggccagccgcgccgatgca
cttgaggccgccgtaggccccgaaatgacgctcgaagacggtgtgacccttgcacgggcc
gacggcccgccggcggatacgcgcggcaccgggcgtcctggtggcaagcccggggggccg
cctcgcggcaggcccgcaggtcgtcccgccggggcaaaaccgcgcaaaccacgcgacgaa
agccctggctttcatcccgatgcagcccccgcgccggcccccgcgccaaaagcggaccgg
gcgccccacaaacctgccgcagcgccgaaagcggaccgcaagccgcataaacccgccgct
gcccagaagggtaaaaagccaccgaaatcgcacaaaacggaacgctccccgatgaagccg
ggcgcagcgccgaagccaaagagtgaccgtgcgccccaggcggaacgcagcaaagcgccg
cgtgccaaagctgtctggacgaaggaaaaccgcgaagccgcgaaaaccgcacgctctgaa
cgcacaggtgccgacgcgccggatacgggccgcaagccccgcaaaccatcaggaaaaccc
ggcaaacctgcagcagcacccgataagaccgccagcaacaaacgcgcggccgatacatcg
aaaaggttcgtgcccccgcacaagcgcggccagaaacagcagcgcggcccgtccgccacg
ccccgccgcaagccctga
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