KEGG   Roseibium porphyridii: K1718_21495
Entry
K1718_21495       CDS       T09906                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
rpop  Roseibium porphyridii
Brite
KEGG Orthology (KO) [BR:rpop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpop03400]
    K1718_21495
Enzymes [BR:rpop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     K1718_21495
    5.6.2.6  RNA 3'-5' helicase
     K1718_21495
DNA repair and recombination proteins [BR:rpop03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    K1718_21495
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: WFE88709
UniProt: A0ABY8F054
LinkDB
Position
4676609..4679113
AA seq 834 aa
MDAPLLPNRFQNWFASRGWAPRAHQLQLIDHLEQGHSTLLIAPTGAGKTLAGFLPSLVEL
EQKGKRKPGQAGRGIHTLYISPLKALAVDIARNLEAPVAEMGLPIKLETRTGDTPSHKRQ
RQKLNPPDILLTTPEQIALLLSDPLSARLFGSLETVILDELHALVTSKRGDLLALGLARL
RRLAPGLRTIGLSATVAEPEDLQAYLVDQTDPEKRNLSHVVKVSGGAQPDISILDSEERL
PWSGHSSRYAIPDIYQMIKAHNVSLLFVNTRSQAEMVFQELWRINEDTLPIALHHGSLDV
GQRRKVEAAMASGGLRAVVATSSLDMGIDWGDIDLVINIGAPKGASRLAQRIGRANHRMD
DPSKAILIPSNRFEVLECQAALAASKRGEQDTPPLRKGALDVLAQHLLGLACADPLDAVA
IFDEIRSSETYRQLDWETFERVLDFVATGGYALKSYEQYAKLRKAKDGLWRISHPKIAQQ
YRLNVGTIVEAPKLKVRLVRSKADGRRTPVGRGGRILGEIEEYFIDQMTPGDTFLFGGEI
VRFEGIKETEAYVSRSKSENPMIPSYMGGKFPLSTYLAEGVRAMLADPPSWKELPHQVRD
WLEIQRDKSVLPAKDGLLVETFPRSNKHYMVCYPFEGRLAHQTLGMLLTKRLERMGARPM
GFVANDYALSIWGLGDLSLLFSSGKIPLEKLFEQDILGDDLDAWLAESSLMKRTFRNCAV
IAGLIERRHPGKEKSGRQVTVSTDLIYDVLRAHEPDHVLLKATWNDAAEGLLDISRLGEL
LTRIQGRITHTSLEHVSPLAVPILLEIGKEPVYGEAMDSLLEETAEELVLEAME
NT seq 2505 nt   +upstreamnt  +downstreamnt
atggatgccccactcctacccaaccgcttccagaactggttcgcctcgcgcggttgggcg
ccgcgtgcgcaccaattgcagctgatcgaccatctggagcaaggtcactccaccctattg
atcgcaccaacaggtgcaggcaaaacgcttgcagggttcctgccgagcctggtggaactg
gagcaaaagggcaaacgcaagcccggacaggccggacgcggtatccacacgctttacatt
tcaccgctcaaggcgctcgccgttgacattgcccgtaatcttgaagcaccggtcgcggaa
atgggcctgcccatcaagctggaaacccggaccggtgacacaccttctcacaaacgccag
agacaaaaactcaatccaccggacattctgctgacgaccccggagcagatcgctctgttg
ttgtccgatccgttgtccgcgcgtctgttcggatcccttgaaacggtcatcctggatgaa
ctccatgcgctggtgacttccaagcgcggcgatctgctggctctgggccttgcccggttg
cggcgccttgcaccgggtctgagaacaatcggcttgtccgcgacagtggcagagcctgaa
gaccttcaggcctaccttgtcgatcagaccgatccggaaaaacgaaacttgtcgcatgtg
gttaaggtcagcggcggtgcccagccggatatttccatcctcgattcagaagagcgtctt
ccctggtcgggtcattcgtcgcgttacgccatccctgacatctaccaaatgatcaaggcg
cacaatgtttcgctgctgttcgtcaacacgcgcagccaggccgagatggttttccaggaa
ctgtggcggatcaatgaggatacattgccgatcgcgcttcaccacggttcactggatgtc
ggccagcgacgcaaggtcgaggctgcaatggcgtcgggtggtctgcgggcggttgttgcc
acctcttccctggatatgggcatcgactggggcgacatcgatcttgtcatcaatatcggc
gcaccgaagggagccagccgccttgcccagaggatcgggcgcgccaaccaccgcatggac
gacccctccaaggccatcttgattccatccaacaggttcgaggtgcttgaatgccaggcg
gcacttgctgcttcaaaaaggggtgagcaagacacgcctccgctgcgcaagggcgccctg
gacgttcttgcccagcatctgctcggcctcgcctgcgccgatcctctggacgcggttgcc
atatttgatgaaatccgttcttcggagacctatcggcaactcgactgggagactttcgag
cgggtgctcgattttgttgccactggtggatacgcgctgaaaagctatgaacaatacgca
aagctgcgcaaggcgaaggatggactctggcgcatttcgcacccgaagattgcgcagcaa
taccggctgaatgtcggcacgattgtcgaggctcccaagctgaaggtgcggttggttcgg
tcgaaggccgatggccggcgcacgcctgtcgggcgtggtggtcgaattctgggagaaatc
gaggagtatttcatcgaccagatgacaccgggcgacacattcctgttcggcggagagatc
gtccgtttcgaaggtatcaaggaaaccgaggcctatgtttcccggtcgaaaagcgaaaac
ccgatgatcccgtcctatatgggcggcaaatttccgctctccacgtatctggccgaaggg
gtcagagcgatgcttgcagatccgccttcctggaaagagttgccgcatcaggtgcgcgac
tggctggagatccagcgcgacaagtccgtgctgccagccaaggacggattgctggtcgag
accttccccagatccaacaagcattacatggtctgctatccgttcgaaggccgtttggcg
caccagacgctcggcatgctgctcaccaaacggctagagcggatgggcgcaagacccatg
ggatttgttgcgaacgactatgcgctgtccatttggggtcttggcgacctgtcgcttctg
ttttcgtcaggaaagatcccgctggaaaagttgttcgaacaagacattctgggcgacgat
cttgatgcgtggctggctgaatccagtctgatgaaacgcacgtttcgcaactgtgcggtg
atcgccggcctcattgagcgccggcatccgggcaaagagaaatccggcaggcaggtcacc
gtatcgactgacttgatctatgatgttctgcgcgctcatgaaccggatcacgtcttgctg
aaagcaacctggaacgatgcggcggaaggacttttggatatctcgcgtctgggggaactt
ctcacacgtattcagggacgaatcacgcatactagccttgagcacgtctctccactcgcc
gtgcccattctcctggaaataggcaaggaaccggtctacggggaagcgatggattcgcta
ttggaagagacggcagaggagctggttctggaggccatggaatga

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