Roseibium porphyridii: K1718_22390
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Entry
K1718_22390 CDS
T09906
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpop
Roseibium porphyridii
Pathway
rpop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1718_22390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpop03019
]
K1718_22390
Enzymes [BR:
rpop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K1718_22390
Messenger RNA biogenesis [BR:
rpop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K1718_22390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_22
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
WFE88880
LinkDB
All DBs
Position
complement(4876814..4878109)
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AA seq
431 aa
AA seq
DB search
MTDFHSLGLSGDLLAAVSENGYETPTPIQQKAIPLILEGKDLMGLAQTGTGKTAAFGLPL
IDQLVADGTHPRARGTRALVLAPTRELVNQIAKNLISFLKKTPLRVTSVVGGVSINGQIK
RLSKGTDILVATPGRLLDLVDRGAVDLGTASYLVLDEADQMLDLGFIHALRRIAGLVADE
RQTLLFSATMPKQINELAQSYLKDPERVEVAPAGKTADKITQSVHFMDRKAKGDFLVDQL
KAKPDGMSLVFCRTKHGAERLMRKLAQSGIAAGSIHGNKSQNQRERAIRDLKSGAINVLV
ATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAVALCAPEEIGLFRQI
EKLIGIDIAVAGGDVPPMSAASKVKRGGGNRGNKPSTKKPYRKQSASGDNDNRAQSRRSR
RRRTSNRQNAA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgattttcacagcctgggactttccggcgaccttcttgctgccgtttctgaaaat
ggctatgagacaccaacgccgatccagcaaaaggcaatcccgctcattcttgagggcaag
gacctcatgggccttgctcagacgggtaccggcaagaccgccgctttcggacttccgctg
atcgaccagctcgtcgccgatggaactcatccgcgcgcacgcggcacgcgtgcgctggtg
cttgcgccaacacgtgaacttgtcaatcagatcgcaaagaacctgatttctttcctgaaa
aagacaccacttcgggtcacttctgttgttggtggtgtgtccatcaatggacagatcaaa
cgcctttccaagggtacggacattcttgtggcgacaccgggacgtctgctcgatctcgtt
gatcgtggggcggttgatcttggtacggcgtcctatctcgttcttgacgaagcagatcag
atgctggatctcggcttcattcatgcacttcgccggattgccggcctggttgccgatgaa
cgccagacactgctgttttccgccacgatgccgaaacagatcaatgaacttgcccagtcc
tacctcaaggatccggagcgggttgaagtcgcgcctgccggcaagactgccgacaagatc
acacagtcagtccacttcatggatcgaaaggccaagggcgatttcctggtcgatcagttg
aaggccaagccggatggcatgtctttggtcttttgccgcaccaaacacggggcagagcga
ctgatgcgaaaactggcgcagtccggcatcgctgccgggtccatccatggcaacaaaagt
cagaaccagcgcgaacgggccattcgggatctcaagtcaggtgccatcaatgttctcgtt
gcaacggatgtcgctgcaagagggatcgatatccctggcgtcagccacgtctataacttc
gagttgcctgaggttgctgaagcctatgtgcatcggattggccggacagcccgcgcaggc
gcggaaggtgaagccgttgcgttgtgcgcaccggaagaaatcggccttttcaggcagatc
gagaaattgatcggcatcgatatcgcggttgccggcggagacgttccacccatgtctgca
gcaagcaaggtgaagcgcggtggaggcaatcgaggcaacaagccttcgaccaagaagccg
taccgcaaacaatccgcgtcgggcgacaacgacaacagggcacaatcccggcgctcgcgc
cgtaggcggacgtcaaatcggcaaaacgccgcctaa
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