Candidatus Rhabdochlamydia porcellionis: RHAB15C_0000110
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Entry
RHAB15C_0000110 CDS
T07448
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rpor
Candidatus Rhabdochlamydia porcellionis
Pathway
rpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHAB15C_0000110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpor03021
]
RHAB15C_0000110
03019 Messenger RNA biogenesis [BR:
rpor03019
]
RHAB15C_0000110
Transcription machinery [BR:
rpor03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RHAB15C_0000110
Messenger RNA biogenesis [BR:
rpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RHAB15C_0000110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
AAA_25
NACHT
AAA
S1CSD-TOTE-2
OB_RNB
DUF5855
Mor
Motif
Other DBs
NCBI-ProteinID:
QZA58239
UniProt:
A0ABX8YY73
LinkDB
All DBs
Position
complement(131102..132472)
Genome browser
AA seq
456 aa
AA seq
DB search
MGNLNEGALTSMTNEDTTQGFQDPEQNNSSLSMTTPVESITKIADLQRMNMDQLTLFARN
IGLKNLGALTKSQMVFEIVKFLSEKPQEVLVGEGVLEILPDGFGFLRSPNYNYLPSAEDI
YVSPAQIRRFDLKKGDTIYGTIRSPKEKEKYFALLKVEKINNKSPEKARDRILFENLTPL
YPDARLVMECGKEKLSPRVLDLTAPFGKGQRGLIVAPPRTGKTMILQTIANSIAINHPEV
FLMVLLIDERPEEVTDMIRSVKGEVISSTFDEPPERHVQIAEMVIEKARRLVEYGHDVLI
LLDSLTRLARAYNTVQPHSGKILTGGIDANALHKPKRFFGAARNVEEGGSLTIIATALID
TGSRMDEVIFEEFKGTGNMELVLDRRLADRRVWPAIDLIKSGTRKEELLYHPEELEKIYV
MRQALADLAPLDAMNLLLGRLKKTGSNAEFLLTMKE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatttaaacgaaggagccttaacttcaatgacaaacgaagacaccactcaaggg
ttccaggacccagaacaaaacaattcttctctttctatgaccactcccgtcgagtcgatt
acgaaaatagcagatcttcaaagaatgaatatggaccaacttacactctttgcacgcaat
attggtctaaaaaatctcggcgcgcttacaaaatctcagatggtttttgaaattgtaaag
tttttatctgaaaaacctcaagaggttttggtaggagaaggagtccttgaaatcctgcca
gacggatttggcttcttacgctctcctaattataattatcttccttctgctgaagatatc
tatgtttcaccagcacagattcgtcgttttgatttaaagaaaggagatacgatatatgga
accatccgttctcctaaagaaaaagaaaaatactttgctctattaaaagtagaaaaaatt
aataacaaatctcctgaaaaagcaagagaccgcattttatttgaaaaccttacccctctt
tatcctgatgctcgccttgtgatggaatgtggtaaagaaaaactcagtccacgagttctt
gatttaacagctccttttggaaaagggcaaagagggctgattgtagcccctcctcgcact
ggtaaaacaatgattttacaaactattgctaattctattgctatcaatcatccagaagta
tttctcatggtcttattaattgatgagcgcccagaagaggttactgatatgatccgtagc
gtcaaaggagaggtgatttcctctacttttgatgaacctcccgaaagacacgttcaaata
gctgaaatggtgattgaaaaagcaaggcggcttgttgaatatggtcatgatgtacttatt
ctcttagattctttaacccgtttagcacgtgcttataacacagttcagccacattctggt
aaaatcttaacaggaggaatcgatgcaaatgctttgcataaaccaaaaagattcttcggt
gcagcaagaaatgtagaagaaggcggatctctaacaattattgccactgcattgattgat
actggttctcgtatggatgaggtaatctttgaagaattcaaaggaaccggaaatatggaa
ctagttctagatcgacgcttagccgatcgtcgagtatggccagctattgacttgattaaa
agtggaactcgtaaagaagagcttttatatcatccagaagagcttgaaaaaatttatgtc
atgcgtcaagcattagcagatttagctcctttagatgctatgaacttactacttggccgt
cttaagaaaaccggtagcaatgctgaatttcttctcactatgaaagaataa
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