Candidatus Rhabdochlamydia porcellionis: RHAB15C_0000459
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Entry
RHAB15C_0000459 CDS
T07448
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpor
Candidatus Rhabdochlamydia porcellionis
Pathway
rpor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHAB15C_0000459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpor03021
]
RHAB15C_0000459
03400 DNA repair and recombination proteins [BR:
rpor03400
]
RHAB15C_0000459
Enzymes [BR:
rpor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHAB15C_0000459
Transcription machinery [BR:
rpor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHAB15C_0000459
DNA repair and recombination proteins [BR:
rpor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHAB15C_0000459
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF2357
Motif
Other DBs
NCBI-ProteinID:
QZA58583
UniProt:
A0ABX8Z111
LinkDB
All DBs
Position
514989..519185
Genome browser
AA seq
1398 aa
AA seq
DB search
MSEEFNNSRFEKSSRFGKVAIQIASDDKIRNEWSRGEIKKAETINYRTYKPEKGGLCCEK
IFGPTKDWECGCGKYKKIKHKGIICDRCGVEVTLAKVRRQRMAHIELAVPIVHIWFFKTM
PSRIGNILGMSSADLERVIYYEEYIVIDPGHTELEKKQLLSDVQYREAQEKWGTDTFVAK
MGGEAIRDLLEKEDLQTLVVELKDKLRKTKSMQARMKLAKRLKIVEGFTTSPNRPDWMVM
AAIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILKLKTPDVIVRNEKRML
QEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKFNQCGLPKQMALQLFEPFIIKRLKDLGYVYTIRSAKKMIQKQAPAVWDVLEEITKDH
PVILNRAPTLHRLGLQAFIPTLVEGKAIRVHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
VKLLMMAPDNIFLPSSGKPSAVPSQDMILGLYYLMLDPIYIPEEHGKKTKVFVDKQEVLM
ALAPGAGSYNFDESQVEGERRDDLGRGIRLHEKIKLKLDNSIIETTPGRVLFNMIVPKEL
GFQNYTLRKKKMSELVLEVYKKVGLEATVCFLDDIKTLGFSEATKASLSMGVYDVKIPTN
KKKVIEDAEKRIEAVVKQYEDGIITEGERHSKIIGMWTEVTDLLSEELFKMISSLKQGEL
NSLFLMMDSGARGNKSQVKQLGALRGLMAKPSGEIIESPIIANFREGLSVLEFFISSHGA
RKGLADTALKTADSGYLTRRLVDVGQNVIITEADCGTLNGIDVFAIKQGQEELLSLKDRI
FGRAVCEDIYQPGDSTQLIAKAGAVLNVLQAEKIDDAGIESVRIRSALTCEARRGICAKC
YGTDLANGMLVGLGEAVGIIAAQSIGEPGTQLTMRTFHTGGIASAGISPELIAEHDGVLV
YMGLRTVETDEHVFLALNKNGSLHIVRNEGRTLDEYKKLLSTKSIEPLQTFTVELGTRIL
LADGTNIKKKTKIGYWEQHNVPIICERPGYVKYEDLVEGISTQKEINKQTGQTELIVKQH
RGELHPQIVIYADPKCTELVGTYAIPSGAYISVQEGQSVTAGMLLARLPRGAIKTKDIVG
GLPRVAELFEARRPKDAAEIAKIDGVVDFRGVQKNKRIVIVRDDESGMEQEHLIPLTKHL
IVQRGDFVIKGQQLTDGLVVPQEILDICGVRELQRYLVNQVQEVYRLQGVDINDKHIEII
IRQMLQKVRVTDPGDTIFLYGEDVDKKNFHAMNSKTLNEGGRPAQATPVLLGITKASLGT
ESFISAASFQETTRVLTDAACEGKTDYLLDFKSNIILGHMIPGGTGFEEYRERVLNLDRE
EKEPLIFSFNDSDPVLVG
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagaattcaataattcccgctttgaaaaaagctctcgttttgggaaagtggct
attcaaattgcatctgatgacaaaattcgcaatgaatggtctcgaggggagattaaaaaa
gctgaaacaattaactaccgtacctataagccagaaaaaggtgggttgtgttgtgagaag
atttttggtcctactaaggattgggaatgtggctgtgggaaatataaaaaaatcaagcac
aaagggattatttgtgatcgttgtggtgtagaagttaccctagctaaagtgcgtcgtcaa
cgaatggcacatattgagcttgctgttcccattgttcatatctggttttttaaaaccatg
ccatctcgcattggtaatattttagggatgtcctctgctgatttggaaagagttatttat
tatgaagaatatattgttattgatccaggtcatacagagctagagaaaaagcagctgcta
agcgatgttcagtatcgagaagctcaagaaaaatggggaaccgatacttttgttgctaaa
atggggggagaagctattcgcgatcttttagaaaaagaagatctacaaacccttgtagtg
gagctaaaagacaagttacgtaagacaaagtccatgcaagcgcggatgaaattagctaaa
agactaaagattgtagaaggttttaccacttctcctaaccgtccagactggatggtaatg
gcagctattcccgtcattccacctgatttaagaccccttgttcctttagatgggggacgc
tttgcaacatctgatttaaacgatttgtatcgccgtgtcattaaccgtaataatcgttta
aaagcgatcctaaagttaaaaacgcctgatgtgattgtacgcaatgaaaaaaggatgctt
caagaagcagtagatgctttatttgataatggtcgtcatggccatcctgttatgggagca
gggaatcgcccgcttaaatccttatcagaaatgttaaaagggaagcagggtcgtttccgc
caaaaccttttaggaaaaagggtagattactctggtcgctctgtcattgttgtaggccct
gagttaaaatttaatcaatgcggcttgcctaagcaaatggctttgcagttgtttgagcca
tttatcattaagcgcttaaaagatttaggctacgtatacacgatacgttctgctaaaaag
atgattcaaaagcaagctcctgcggtatgggatgtattggaagaaattacaaaagaccat
cctgttattttgaaccgtgcacctactttgcatagattaggccttcaggcatttattcct
acacttgttgaaggaaaggccattcgtgtacacccgcttgtatgctctgcatttaatgcg
gactttgacggtgaccagatggcagttcatgtgcctttatcattggaagcacaactagaa
gtaaagttattgatgatggcaccagacaacatctttttaccttcttctggtaagccttct
gcggttccttcacaggatatgatcttaggtttgtattacctcatgttagatcctatttat
atcccggaagagcatggtaaaaaaacaaaggtttttgtcgataaacaagaggttctaatg
gctttagcaccaggagctgggagctataattttgatgaatctcaagtagaaggtgagcgt
cgtgatgacttaggaagaggaatcagattacatgagaaaatcaagcttaagttagataac
agcattattgaaacaacaccagggcgcgttttattcaatatgattgttcctaaagaactt
ggatttcaaaattacaccttgcgtaagaagaaaatgagtgagcttgttcttgaggtgtat
aaaaaagtaggtttagaagcaactgtgtgcttcctcgatgatattaaaacccttggattt
tccgaagcaacaaaagcttctttatcgatgggggtttatgatgttaaaatcccaaccaat
aaaaagaaagttattgaagacgctgaaaaacgaatcgaagcggttgttaaacagtatgaa
gatggtattattactgagggagagcgtcactccaaaattattggtatgtggacagaggtg
acagatctattatctgaagagttattcaaaatgattagctcattaaagcagggtgaatta
aactctcttttcttaatgatggattctggtgctcgaggtaataagtctcaagttaaacag
ctcggagctttacgtggtttaatggcaaaaccatctggtgagattattgaatctcctatt
attgcaaacttccgtgaaggactaagcgttcttgagttctttatctcctctcacggagct
cgaaaaggtcttgctgataccgccttgaaaacagcagattctggatacttgactcgtcgt
cttgtagatgtagggcaaaatgtcattattacagaagctgactgtggaacgttaaatgga
attgacgtttttgcaattaagcaaggacaggaagagcttctttctttaaaagatcgtatt
tttggtcgcgctgtctgtgaagatatttaccaaccgggtgatagtacacaattgattgca
aaagcaggagccgttctcaatgttttacaagcagaaaaaatcgatgacgcaggaatagaa
agcgttcgtattcgttctgcccttacttgtgaagcaagaaggggaatatgtgcaaagtgt
tatggcactgatctggcgaatgggatgctggttggtttaggcgaagctgtagggattata
gctgctcaatctatcggagaaccaggaactcagcttactatgcgtactttccatactgga
ggaattgcatcagcgggtatttctcctgaattaattgcagaacatgatggtgttttagtc
tatatgggtcttcgtaccgtggagacagatgaacatgtgttcttagcgttaaataagaat
ggttccttgcatattgtgcgtaacgaaggaagaactttagatgagtataagaaattactc
agcactaaatctatagaacctttgcaaaccttcacagtagaactaggaacgcgtatttta
cttgccgatggaactaacatcaaaaagaaaacaaaaattggttattgggaacaacataat
gttccgattatttgtgagcgtccaggttacgtaaaatacgaagatcttgtggaaggaatt
tcaacacaaaaggaaataaataagcaaacaggtcaaacagaactgattgttaaacagcac
cgcggtgagctccatcctcagattgtcatttatgcagatcctaaatgtacagaacttgtg
ggaacatatgcgattccatcaggtgcatatatttcggtacaagaagggcaatctgtaaca
gctggtatgttgctagctcgtcttcctagaggagctattaagacaaaagatattgttgga
ggattgcctcgtgttgcagagctatttgaagctagacgtccaaaagatgctgctgagatt
gccaagatcgatggagttgttgatttccgtggggtgcaaaagaataagcgtattgtgatt
gttcgcgatgatgaatccggcatggagcaagagcatttaattcctttgactaaacactta
atcgtgcaaagaggtgactttgttattaaaggacagcagttaaccgatggtttggttgtg
cctcaagaaatccttgatatttgcggtgttcgcgagctacaaagataccttgtcaaccaa
gtgcaagaggtttatcgcttacaaggggtagatatcaatgataaacatattgaaatcatt
atccgtcagatgttgcagaaagtacgtgtaacggatccaggcgataccatcttcttatat
ggagaagatgtagataagaaaaacttccatgcgatgaactctaaaaccttaaatgaaggt
gggcgtcctgcgcaagcaactcctgtacttttgggtattactaaagcttcattgggaaca
gagtcctttatttctgctgcttctttccaagaaacaacacgtgtcttaacagatgcagct
tgtgaaggtaaaacagactacttgctagactttaaatctaatattatcttaggacatatg
atccctggaggaactggatttgaagagtatcgtgaaagagttttaaatcttgatcgtgaa
gaaaaagagccacttattttttcttttaatgatagtgatcctgtgcttgttggatag
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integrated database retrieval system
