Rickettsia parkeri: MC1_01020
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Entry
MC1_01020 CDS
T01785
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpp
Rickettsia parkeri
Pathway
rpp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MC1_01020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpp03021
]
MC1_01020
03400 DNA repair and recombination proteins [BR:
rpp03400
]
MC1_01020
Enzymes [BR:
rpp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MC1_01020
Transcription machinery [BR:
rpp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MC1_01020
DNA repair and recombination proteins [BR:
rpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MC1_01020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
DUF7749
Motif
Other DBs
NCBI-ProteinID:
AFC74378
LinkDB
All DBs
Position
186923..191041
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQTTSSEVKKKKLVKRLKLVENFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKSEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGAGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKCINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIAMPPVNDAPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINEAKLEQIESAGFDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVDASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEIDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLVGEKIDRHEFDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAAKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcagataagg
attaatatagcaagtcccgatcaggtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatagaacttttaagcctgagaaagatggtttattttgtgcaagaatt
tttggtccggtaaaagattatgaatgtctctgcggtaaatataagcggatgaaaaatcgt
ggcattacgtgtgagaaatgcggcgttgaagttacagtttctagagtaagacgtgaaaga
atggggcatattgaacttgcagctcccgttgctcatatttggtttttaaagtcgctacct
tcaagaattagtacacttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtagttgacccagggctatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagag
ttatacgaggaattacaaaccacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagagaattttttagagtcggaaaacaagccggaatggatgattatggat
gttttaccggttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcagacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatgttacaa
gaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcaggggcgtttccgtcag
aacttgctaggtaagagggttgattactcaggacgttcggttatcgtggtaggacctgag
cttaaacttcaccagtgcggtttacctaaaaaaatggctctggagttatttaagccgttt
atttattctaagcttgagttgtacggcatcgctacaactattaaagccgctaaaagaatg
gtggaagctgaaaaatccgaagtgtgggacgtgcttgaagaggtaattagagagcatccg
gttttactgaatagggctccgacgttacataggcttggtattcaagcatttgaaccgcta
ttaattgaaggtaaagcgatccagcttcatccgcttgtgtgtgctgcgttcaatgcggat
tttgatggtgatcagatggcagtacatatcccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccccgcaaacggtcgtcctatcatt
gtaccggataaagatatagtgcttggtttatattatctaacccttgcatttgataatgaa
gtaggtgcagggatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaaggtaaa
atggtccctgttatcattgatactacttacggtaggttaatggtcggtgagttattgcct
tctaaccctaatatagaattcaagtgtattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacggtaatttttgccgat
cagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaacgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataataaagta
gtcgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
atgccgccggttaatgatgctccaaatcatcagaaaataaatgctatatatatgatggct
atttccggagcaagaggttctttccagcaaattaagcagctaggtggtatgcgaggttta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaacggcaagctcaggttacttaacaagaaaattagtagatgttgcacaagat
tgtattattactgaaaaagattgtggaactgataaaggaattgaagttaagagtgttatt
gaaggtggagaagttatagtacctttagcggaaaagattttaggtcgtactgctgctatt
gatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcggcaggattcgacagaattatgataaaatccgtatta
acctgtgaaagtactaccggtatatgtagcatatgttacggtagggatcttgctaccggt
acattagtatcggagggtgaagcaatcggggttattgctgctcaatctatcggtgaaccg
ggtacgcagcttacaatgagaactttccatattggaggagcggcaacaaaaggtgctgag
gtttcttccgtagacgcttcctatgacgcaaaagtgaaaattataagtcgtaacgttgtg
attaattctgaagaacgcaaaattgttatgagccgaaattgtgaattattattgcttgat
aataacggtaatgaaaaggctcgtcataaaattccatacggtgctagattacttgttgat
gacggtgatatggtgattaaaactcaaaaactagcagaatgggatccttatactataccg
attatcacggagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgatgaagctaccggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgtccgcgtatacagcttttagatgctaaaggtgaagtt
atcaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaagaatca
accactactaaagatattacaggtggtttaccaagagttgccgagcttgtagaagcaaga
cgccctaaagatcatgcagttattgccgaaattgacggtagagtagaattcggtaaagac
tataaatctaaaagacgtattattatacatccgattgatgaaacaatgtctattgagtat
atggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaaggtgat
ttattgattgacggtaatccggtacttcaagatattttaaaagtaatgggcgtagaggtt
cttgcaaattatattgttaatgaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattatccgtcagatgttacaaaaagtagaggttacggat
tcaggcggaactacgttattagtaggtgaaaaaatagatagacatgaatttgatgagata
aatgaaaaagctatgaaaaatggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctccgcggcatcattccaagagact
actagagttttaactgaagcagctattgctggtaaagtagataagttgcgaggactaaaa
gaaaacgtgatagttggacgattagtacctgctggaaccggttactttatggataaaatg
cgtaaagcagccgcaaagcttgatgaagagaatgtataa
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