Rickettsia parkeri: MC1_05105
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Entry
MC1_05105 CDS
T01785
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpp
Rickettsia parkeri
Pathway
rpp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MC1_05105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpp03400
]
MC1_05105
Enzymes [BR:
rpp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MC1_05105
DNA repair and recombination proteins [BR:
rpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MC1_05105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
Cas3-like_C_2
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AFC75094
LinkDB
All DBs
Position
complement(893496..896864)
Genome browser
AA seq
1122 aa
AA seq
DB search
MLQQKFPAAAKSFFTIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYN
TIPYDHTSPNANILSRRAETLIKLTTNNSNSNKVLITHTVNLLNKLPPKDFFSKYFLKLS
PKMKFTMDELVMFLVDNSFTRNASSIDVGEFAVRGEIIDIILSGPKAYRIHFSWGYIESI
KEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNNYLRNFGVNHTDNVLYEAVISGR
KFTGYEQLLPLFYDSCSNLIDYLNDPIFIFDHLSKQAILEFEHSYNDFYSARSEANKLKF
NSFYPTLSPTSLYFTASEITALLEQKNNILLTFENSEQASLIKNIAATSFIEKKTVSDKL
FEVIKANSHKKIIIGSSVLSSFERIKSIIQNYEYKYNEINKLDEAKASIINVAIIPLNQS
FYTKEYLFITASELLEEKPSSTNTNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEVL
EIKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAELDKLGSVSWQRSKAKLKKRIK
EIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLM
DRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGL
NIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQ
KEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMPYDPVII
RDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFY
AGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRIGRGKMRGYAYLTVAS
HKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQSGQIKEVGTELYQEM
LEEQIAIFKDEPIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRRIGNLSNEIEVET
FKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMTDKIIK
FVSTYSNQAKIKPDNKLVYIKKLVDKNIIVEANQLLWNLSEV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgttacaacaaaaatttccggcggctgccaaatctttctttacaattgataattttact
aagaatcttaagcaagatttcatcttgagtgcgagtaatgaagaggaggcgttgcaatta
tacaagcaagctttatttttttcttctaatgaaaatatttattactttccaagctataat
accatcccttatgaccatacgtcaccaaatgcaaatatcttatctagacgtgcagaaaca
ttaatcaagctaacaacaaataatagtaatagcaacaaagtacttatcactcatacagtg
aacttattaaacaaattaccgccgaaagattttttttctaaatattttttgaaattatcc
cctaaaatgaaatttactatggatgagcttgttatgtttctagtagacaatagttttaca
agaaatgcgagtagcatcgatgtcggggaatttgcggttagaggcgaaatcattgatata
atattgtccggtcctaaagcttatagaattcattttagctggggttatattgaatcaata
aaagaatttgatattgatacgcaaatttcgactaaatcctgcagggagcttattattagt
cctgcaaatgagatagttttaaatagtgaaactataggtaattttaagaataattactta
cgaaattttggagttaatcatactgataatgttttatatgaggcggtaatatctggaaga
aaattcacaggatatgaacaattactcccattattttacgattcctgctctaacttaata
gattatttaaacgatcctattttcatattcgatcatttgtcaaaacaagccattttagaa
tttgaacatagttataacgatttttattcggcaaggtcagaggcaaataaacttaaattt
aatagtttctatcccaccctttcaccgactagcttatattttaccgcttctgaaataacg
gcattactagaacaaaaaaataatatactacttacttttgaaaactcagagcaagctagc
ttaattaaaaatatcgctgctacaagttttatagaaaagaaaacggtttccgataaatta
tttgaggttattaaagcaaattctcataagaaaattattataggctcaagcgttttaagt
agttttgagcgaatcaaaagcataattcaaaattatgaatataaatataatgagataaat
aaattagatgaggctaaggcttcaataataaatgtcgcgataattcctttaaatcaaagc
ttttatacgaaagaatatttatttattaccgctagcgaattattagaagaaaaacctagc
tctacaaacactaacaaaaaacttaaaaatatcttgctggagcttgataatttagctgaa
ggcgaatttgttgttcacaaagatcatggaatagggcagtttttaaagctagaagtttta
gaaatcaaaggcaaaccacatgattttttaaagattttatatgccggcaatgataaatta
tatataccagttgaaagtatagaggtaataaaaaaatacggcaatgataatgcggagctt
gataagcttggtagcgtttcatggcaaagaagtaaggcaaagcttaaaaagcgtataaaa
gagatagcactgcatttaatacaaatagcagctaaaaggaaacttaatagtagtgcttcc
gttgaatttgatcttgaagaatatgataaattttgtgctaattttcctttcagcgaaacg
gaagaccaattaatcgctataaacgatattaaagaagatctaagaaacggtatgttaatg
gataggttaatatgcggtgatgtcgggtttggcaaaacagaggtagcaatgcgtgccgtc
tttatggtagcaaaatctctaaatgaacatttacctcaagtagccgtagttgtaccgaca
actattttatgtagtcaacatttttcaaggttcatagaaaggttcaaaggttttggttta
aatatcaagcaattatctagcgttattagttctaaagaagcaaaaattataagatcggag
cttgaaagcggtaaaataaatataataataggcactcattctttattacataaaaatata
aaattctttaatttgaaattgttaataatcgatgaagaacaacatttcggtgtcggtcaa
aaagaatttcttaaatcgctaaaatcctcttcccatgtacttgcaatgtcggcaacaccg
attcctcgaacgctgcaaatgtcaatgaccggtttaaaagaacttagcattattgcaacg
ccgcctctaaacaggctggaagttcatacctcggttatgccgtatgatcccgttattatc
agagatgcattattacgcgaacattttagaggcggaagaagtttttatgtagttccaaga
attaaagatatagaggatatcgcaaaacaattaaaacaaatcgtgccggaattaagttat
aaaatagcttacggaaaaatgactccgagtaaaattgatgaggttatgagcgagttttat
gccggcaaattcgatatactagtctcaactactattatagaatcaggaattgatatagcc
gaggcaaataccatgatcatacataatgctgatatgctgggtcttagtcagctatatcaa
ttgcgtggtcgcataggtcgaggtaaaatgcggggttatgcctatctaacggtagcaagt
cataaaaagatgacatcgcactccttaagacgcttagagataatacaaaatagttgtgct
ttgggctcaggttttactattgcaagccgtgatatggatttacgaggtttcggtaatttg
ataggtgaagaacaatcaggacaaattaaagaagtaggtacagaactatatcaagaaatg
ctggaagaacaaatagctatttttaaagatgaaccgattgtttcagaacaaccctttatc
ccgactattaatttgggattatccgtctttattccagataattatgtagccgatgcagct
cttaaacttggactatatagaagaataggtaatttaagtaatgagatagaagtagagaca
tttaaagatgagatgattgatagattcggtttactaccgattgaatttaataatttactt
gatattgtaaaaataaaactattatgctttaagttaaatattgaaaatctagattcagga
gataacggatttgtgattaaattttataaaaatgccgatatgactgataaaattataaaa
ttcgttagtacttactctaatcaggcaaaaatcaaaccagataataaattagtgtatatc
aagaaattagtagataaaaatataattgttgaggcaaatcaactactttggaatttatcg
gaggtgtag
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