Rickettsia prowazekii Rp22: rpr22_CDS134
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Entry
rpr22_CDS134 CDS
T01977
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpq
Rickettsia prowazekii Rp22
Pathway
rpq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
rpr22_CDS134 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpq03021
]
rpr22_CDS134 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpq03400
]
rpr22_CDS134 (rpoC)
Enzymes [BR:
rpq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
rpr22_CDS134 (rpoC)
Transcription machinery [BR:
rpq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
rpr22_CDS134 (rpoC)
DNA repair and recombination proteins [BR:
rpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
rpr22_CDS134 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADE29651
UniProt:
D5AW62
LinkDB
All DBs
Position
164912..169030
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYDELHITSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTIAFDNEVGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRDQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVNDYPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEIIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINESKLEQIESAGLDRIMIKSVLTCESSTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDSKGEV
ITLSNGLEARYYLPVGAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDGTMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLVGEKIDRHEFDEINAKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagttaatttttatggacaattaagtaatactcaacaatttgaccagataagg
attaatatagccagtcctgatcaggtacgttcttggtcttttggtgaagtaacaaaacct
gaaacgattaattatcgcacttttaaacctgagaaagacggtttattttgtgcaagaatt
tttggtccagtcaaagattatgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggcattacatgtgagaaatgtggtgttgaagttacagtttctagagtaagacgtgaacga
atgggacatattgagcttgcggctcccgttgctcatatttggtttttaaagtcacttcct
tcgagaattagtacgcttcttgatatgacaatgcgagatgtggaaaagattctttatttt
gaaaattatgtagtagttgatccagggttatcaattttacaaaaaggagaacttttgaca
gaagaagaattacaaaaagcaaaagataagtatggtgaagatgcatttactgcttctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa
ttatacgatgaattacacattacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtcgaggattttttagagtcagaaaataagcctgaatggatgattatggat
gttttacctgtgatccctcctgaaattagaccgcttgttatgcttgatggtggaagattt
gctacttcagacttaaatgaactttatagaagggtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgacataatagtcagaaatgaaaaaagaatgttacaa
gaagctgtggatgcgttatttgacaatggtcgtcgcggtagagcagcaaaaaatgctaat
aagcgcccatttaagtcattaagtgatatgcttaaaggtaagcaaggtcgttttcgtcag
aatttactcggtaagagggttgattattcaggacgttcagtgatcgtagtagggcctgag
cttaaacttcatcaatgcggtttacctaaaaaaatggctctagaactatttaagccgttt
atttattctaagcttgagttgtatggtattgctacaactattaaggctgctaaaagaatg
gtggaagcggaaaagcctgaagtttgggatgtacttgaagaggtaattagagagcatccg
gttttactgaatagagctccaactttacataggcttggtattcaagcatttgaacctcta
ttaatcgaaggtaaagcaatacagcttcatccgcttgtttgtgctgcgtttaatgcggat
tttgatggtgatcagatggcggtacatattccattatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagtcctgcaaatggacgtcctattatt
gtaccagataaagatatagtacttggtttatattatcttactattgcatttgataatgaa
gtaggcgaagggatgatgttctcagatttagctgaaatggaacacgcgttatataataaa
tttatcactattcatacaaagatcaaatatcgcagagatcagttaaatgctgaaggtaaa
atggtacctgttatcattgatactacatatggtaggttaatggtcggtgagttattacct
tctaatcctaatatagagtttaagtttattaataaacagctaactaaaaaagatatatca
ttagttatagatttagtttatcgtcactgtggtcaaaaagcgacagttatttttgctgat
cagttaatgaaattaggctttaaatatgcttgctcttcaggtatttcttttggaatggat
gatatggtagtgccagaatctaagagtactcatatcaatgaaacacaacttgagataaaa
gaatttgaacaacaatattcaaatggtttaattacttatggagagaaatataataaagta
gttgatgcttggtcaagatgtacagatagagtagcaaacgatatgatgaaagagattgct
acgccaccagttaatgattatccaaatcatcagaaaataaatgctatatatatgatggct
atttctggagcaaggggttctttccagcagattaagcagctaggtggtatgcgaggttta
atgacgaaatcaaacggtcaaattatacaaacgcctattatctctaactttaaggaaggc
ttaactgaatttgagtgttttaattctgctaatggaatgcgtaaagggcaaatagatact
gctttaaaaacagcaagttcaggttatttaacgaggaaattagtcgatgttgcacaagat
tgtattattactgaaaaagattgtggtactgataaaggaattgaagtgaagagcgttatt
gaaggcggagaaattatagtgcctttagctgaaaagattttaggccgtactgctgctatc
gatatatttcatcctgttactaatgatctcattctcaataaaggtgagcttattaatgaa
tcaaaactggaacaaattgagtcagctggacttgacagaattatgattaaatctgtatta
acctgtgaaagtagtaccggtatatgtagcatatgttatggtagggatcttgctactggt
acattagtatcagagggtgaggcaataggtgttatcgcggcccaatctattggggaacct
ggtacacagcttacaatgagaacctttcatataggaggagctgcaacaaaaggtgctgaa
gtttcttccgtagaagcatcctatgacgcaaaagtaaaaattataagtcgtaacgttgtt
attaattccgaagaacgaaaaattgttatgagtcgtaattgtgaattattattgcttgat
aataacggtaatgaaaaagctcgtcataaaattccatatggtgctagattacttgttgat
gacggtgatatggtgattaaaacacaaaaactagcagaatgggatccttatactatacca
attataacagagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgatgtaactgatgaagctactgggatacctagtaaagttattattgaatcaaagcaa
tattcacgtggtgcagaattacgtccgcgtatacagcttttagattctaaaggtgaagtt
ataaccttatcaaatggtttagaagctagatattacttaccggttggagcagtgttaagt
gtagaagatggaatacaaatatcggtaggtgatatcattgcacgtatacctaaagaatca
accactactaaagatattaccggtggtttaccaagagttgctgaacttgtagaagcaaga
cgtcctaaagatcatgcagtgatcgctgaggttgatggtagagtagaattcggtaaagac
tataaatctaagagacgtattattatacatccaattgatggaacaatgtctattgaatat
atggtacctaaaggcaagcatgttgtagtgaacgaaggagactttgttaaaaaaggtgat
ttattaattgatggtaatcctgtactgcaagatattttaaaagtaatgggtgtagaagtg
cttgcaaattatattgttaaggaggttcaagctgtttatcgcctacaaggtgtaaaaatt
gatgataaacacatagaagttattatccgtcagatgttacaaaaagtagaagttacagat
tcaggtggcactacattactagtaggtgaaaaaatagataggcatgaatttgatgaaata
aatgcaaaagctatgaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctacaaactagatcatttatttctgctgcatcattccaagagact
actagagttttaactgaagcagcgattgcaggtaaagtagataagttacgaggactaaaa
gaaaacgtgatagttgggcgattagtacctgctggcactggttactttatggataaaatg
cgtaaagcagctgtaaagcttgatgaagagaatgtataa
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