Rickettsia prowazekii Madrid E: RP778
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Entry
RP778 CDS
T00018
Symbol
RP778
Name
(GenBank) DNA POLYMERASE III, ALPHA CHAIN (dnaE)
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpr
Rickettsia prowazekii Madrid E
Pathway
rpr03030
DNA replication
rpr03430
Mismatch repair
rpr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RP778 (RP778)
03430 Mismatch repair
RP778 (RP778)
03440 Homologous recombination
RP778 (RP778)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpr03032
]
RP778 (RP778)
03400 DNA repair and recombination proteins [BR:
rpr03400
]
RP778 (RP778)
Enzymes [BR:
rpr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RP778 (RP778)
DNA replication proteins [BR:
rpr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RP778 (RP778)
DNA repair and recombination proteins [BR:
rpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RP778 (RP778)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF5487
Motif
Other DBs
NCBI-ProteinID:
CAA15204
UniProt:
O05974
LinkDB
All DBs
Position
complement(971573..975121)
Genome browser
AA seq
1182 aa
AA seq
DB search
MQPEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKK
LQPIHGVILNIQYDINAFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICEHIGFEDLIK
YQEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMRHDLPEEQFIEN
SYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKTVSENCYFKSPA
EMRKLFSDLPNAIQNTINLRERCYFAAHPNPPMLPNFSTQDISETYLIRKYATEGLLARL
VTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSDFIKWSKKQGILVGP
GRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRS
KYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVPFSAINPVSLEQAIREV
PELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVY
KDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQGIKIDFDDMTFDDK
KTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKH
KLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEME
EQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAE
FLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKSSNTVITHSTKSVIS
RLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVTANFGKLVTDERKARGAFKSITDF
IERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSIPKLIAYSTSYHQEQESNQFSLIK
VSSLSPTILVSSDYADKNTLAFYEFEAMGLFLSNHPLTEYQGIFSRLNILNTRDLYNKLP
NGTNRVTLAGVIQKKDSRMSARGRFVTLVLSDPENIFELTIFSEEVLKDYVHLLDVKSLV
VVNCDVVKDEGGIKLTAKSFLSIEDVMNNRQFELQLYPQNYAELEQIITLLASRTSNGYQ
SNAKATIYLQSKDVKHFIAKITLSETFFLQVQDFEVLNQYIR
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctgaatttatacatttaagaacgcaaagctcttattctttcttagaaagtgcc
ttaacgatcgaaaaagttgtagaacttgctttattacataaaatgcctgctctttgtttg
tcagatagaggtaacttatttggctcactagagttttcattatacgcagtaaaaaaaaaa
ctgcagccaatccacggggttattcttaatatacaatatgatataaacgcttttgcacaa
attttgttgatagctaaagatgaaaccggttataaaaatttactcaaactgtcaagcctg
acttttactaagaatgatcgtaagatatgtgagcacattggttttgaagatttaatcaaa
tatcaagagggagtaatagcgttatgttgttatactgatggtattgtcggaaaatgcttg
ctagctcgtaagcaggaacaagctattctgtttgctcgtagattacaggcaattttagga
gaccgtttttactttgagattatgagacatgatttaccagaagaacagtttattgagaat
agttatattcagatagcttctgaattatctattccaattgttgctactaataaagtgttg
tttagtgaaaaaagcatgcattatgcacatgatgtattgttatgtatatcagaaggtgtt
actaaggaatatcctgatcgtaaaacagttagtgagaattgttattttaaatctcctgct
gaaatgagaaaattgttttctgatctacctaatgcaattcaaaataccatcaatttaaga
gaacgttgttattttgcggcacacccaaatccaccaatgctgcctaatttttcaactcaa
gatattagtgaaacatatttaattagaaaatatgcaacagaggggttgcttgcacggctg
gttacaaagtttaaagctgaaaatatttctctagaacatcaagaaaaattaaaaactgaa
tattttactcgtcttaattatgagctggatattatttgtaatatgaattttgccggttat
tttttgattgtatcagattttattaaatggagcaaaaaacagggtattttagtaggacct
ggtagaggttctggagctggatcagttgttgcgtggagcttacttattactgacctcgat
ccgattaaattcggtttgttatttgaaagatttttaaatcctgaacgtatttcaatgcct
gattttgatattgatttttgtcaagaaaggagagaggaagtaattaattatgtacgttct
aaatacggtcctaatagagtaggacaaattataacttttggtaagatgcaggcaaaagct
gtaattaaggatgttgctcgtgtacttagcttaccttataaattggctgattatctcact
gagcttgtgccttttagtgctattaatccagtgagtctagaacaggcaatacgtgaagtc
ccagagcttgcaaatgctgctaaaggtaatggactatataatttagagggtgatgcagag
ttaattaagttagtgcttgatacttcgttaattcttgaggggctacatagacattcctca
acccatgctgcaggaatcgtaatagcagggactgatttagttgatatagtacctgtatat
aaagatgctaacgccgatatgttgattgtcggttattctatgaaatattccgagattgct
ggtttaatcaaatttgattttttaggactccaaactttaacagttattactaattgtaaa
aaattacttaaagagcaaggtataaaaatagattttgacgatatgacatttgatgataaa
aagacttaccaaatgttatgtaaaggtaaaggagtcggggttttccaatttgaaagtatt
ggtatgaaagatgcacttagacgtcttaaacctgattctatacatgatttgatagccctt
ggtgcgttataccgtcccggtcccatggaaaatatccctacatatatagcttgtaaacat
aaattacagcaacctgattatttacataaattattagagccgatattggaagaaacatat
ggagtggtaatatatcaagaacaagtacaaagaatagcacaggtgctagcagggtataca
ctcggtgcagctgatttgcttcgtagggccatgggtaagaagatcaaaaaagaaatggag
gagcaggaagagatttttgtaaaaggagcaattgctaataatatttcaccgtctcaagcg
aaatctattttttctaccgtagctaaatttgctggatatggttttaataaagctcatgct
gcagcttatggtgttatttcataccaaactgcttatcttaaagctaattatcctgctgaa
ttcttagtagcatgtttaaatcttgaattaaataatcatgataaaattaatttatttctg
caagaagcaaaagataatggtatcaaaattattgcacctaatattaatatttctgagggg
tattttagtgtaaagtcttcaaacactgtgattacgcatagcacaaaatctgtaatatct
agacttaactgtgatattaagaaaattgcaaaagatactgcggttaagccgttgtattgc
aaagacgaaagtacaataattttcgctttaggggctattaagggtgtgacagcgaatttc
ggtaagttagtaacggatgaacgaaaagcaagaggagcatttaaatcaattactgatttt
attgaaagattaccaccaaaatctattaacagtaaattgttggaaaatttaatcaaggca
ggttgttttgatgagttgcatgataatagattgcaattatttttaagtattccaaaattg
attgcttattcaacgtcatatcatcaagagcaggaatctaatcaatttagcttaattaaa
gtttctagtttaagtccaactattttagtatcaagcgattatgcagataaaaatacttta
gctttttatgaatttgaggctatgggtttatttctctctaatcatcctcttactgaatat
cagggaatatttagtcgtttaaatatcctaaatactcgggatttatataataaattacct
aatggtactaaccgagtaacgcttgctggtgtaatacaaaaaaaggattctcgcatgtct
gcaagaggtagattcgtaactcttgttctttctgatcctgaaaatatctttgaacttact
atttttagtgaggaagttttaaaagattatgtacatttacttgatgttaaaagcttagta
gtcgttaattgtgatgtagttaaagatgaaggtggaataaaactcacggccaaaagcttt
ttatcaattgaagatgtaatgaataatagacaatttgaactacaactttacccacaaaat
tatgcagaattagagcagataataacattgcttgcatcgcgcactagtaatggatatcaa
agtaatgctaaagctacaatctatttacaaagcaaagatgtaaagcattttatcgcaaaa
attacattatctgaaacgttttttcttcaagtgcaagattttgaggtattaaatcaatat
attcgatga
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