Rhodococcus pseudokoreensis: JWS13_09275
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Entry
JWS13_09275 CDS
T08508
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpsk
Rhodococcus pseudokoreensis
Pathway
rpsk03420
Nucleotide excision repair
rpsk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWS13_09275
03430 Mismatch repair
JWS13_09275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpsk03400
]
JWS13_09275
Enzymes [BR:
rpsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWS13_09275
DNA repair and recombination proteins [BR:
rpsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWS13_09275
MMR (mismatch excision repair)
Other MMR factors
JWS13_09275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DUF3458_C
Motif
Other DBs
NCBI-ProteinID:
QSE88781
LinkDB
All DBs
Position
complement(817123..820494)
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AA seq
1123 aa
AA seq
DB search
MTIRIDPVELAIGLGQHPPTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGV
VDPEAVLGLTFTRKAAQQLTARIRRRLARLAGSDLLRRVDPSGDLRSRILAGEPEVSTYH
SYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALA
GQLSEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKELLDILDTQHRRVELLPLVQR
LADTLRREGALDFGSQMSLAARVAADHPEVGLAERTRFRVVLLDEYQDTGHAQRVLLSSL
FGGGLDGELALTAVGDPMQSIYGWRGASAANLPRFATDFPLTNGDPAPTLELLTSWRNPP
EALALANMASASLRERGVAVSMLRARPQAVPGDVRLALTGDVVQEREWVADRIAEQYADA
ADRGDDPPTAAVLIRRNADAAPIAEVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVAD
PMAGSAAVRMLTGARWQIGAADLTALSRRASELAIGTGYGTTGAVTDSAALADAVGEALP
GEHAEQAGLADALADPGPAERYSQVGYARITAVAAELASLRERIGQPLTELVAEVERVLG
IGIEAQARTRQSARGSAGREHLDAFADVVAGYANRTSATVTGLLAFLSAAESVEKGLAPG
EVEVDPHRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSRTASGSWLGALGELPPSLRGDRA
RPGESADGVPVLDLENLYDRKDLEEAVKAHKSALAARRLDEDRRLFYVALTRTERVLFAS
GHHWAESGTEPKGPSEFLTELRDTVTDEQHEGIGTVDLWAPAPEPEEQNPLTSTPKSAVW
PRDPLGLRRESVERGAALVVAALKNVGKQAPADEDDDPENWAADVDALLAEREARANART
EVVLPGQLSVSQLVELEADPDALAARLRRPLPFPPNPLARRGTAFHAWVERRFGATRLLD
LDELPGAADTGAGPDADLATLQDAFLRSPWADRNPTEVEVPFETSVAGTVLRGRIDAVFT
DPDGGWTVIDWKTGAEPSAANEKAVVMQLAAYRLAWAELMDVPIERVRAAFHYVRTGRTI
APDRLPGADALARLLRTAGAGGPDDGGPDDGGPEDDLRRDAEL
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccgcatcgatccggtggaactcgcgatcggactgggacagcatccgccgacc
ccggaacaggccgcggtcatcgcggcccccctcggcccgaccctcgtcgtcgcgggggca
ggcgcgggcaagaccgagacgatggcggcccgcgtcgtgtggctggtggccaacggggtc
gtcgaccccgaggcggtgctgggcctgacgttcacccgcaaggcggcgcagcagctgacc
gcccggatcaggagacgccttgcccggctcgcgggttcggacctgctccgaagggtcgat
ccgagcggcgacctgcgatcgcgcatcctcgccggcgaaccggaggtcagcacgtaccac
tcctacgccggacggctgctgtcggagcacgggctcctgctgcccatcgaaccgtcggcg
acgctgctgtcggagacggaactgtggcagctggcgcaccgggtggtgagctcgtgggac
ggcgacctcgacaccgacaggaatccggcgtccgtcaccgaggccgtgctcgcgctggcc
gggcagctctccgagcacctcgtcgaaccggacgatctgcgggaggcgcacaccgaactc
gacaagctcgtccacaccctgcccgccggaccgcggcagcgcggcggtcccggcaaggaa
ctgctcgacatcctcgacacccagcaccgccgggtcgaactcctgccgctggtgcagcgg
ctcgcggacaccctgcgacgggaaggcgcgctcgacttcggcagccagatgtcgctggcg
gcacgcgtggccgcggaccaccccgaggtcggcctcgccgagcgcacccgtttccgggtg
gtgctgctcgacgagtaccaggacacgggacacgcgcagcgggtgttgctgtcgtcgctg
ttcggcggcggcctcgacggcgaactcgcgctcaccgcggtgggcgatcccatgcagtcg
atctacggctggcgtggagcgtcggccgccaacctgccccgcttcgccacggatttccca
ctgacgaacggggatccggcgccgacgctggaactgctcaccagctggcgcaacccgccg
gaggccctggcgctggccaacatggcgtcggcgtccctgcgggagcggggtgtggcggtc
agcatgctgcgggcgcggccgcaggccgtacccggggacgtgcggctggccctcaccggc
gacgtcgtgcaggaacgggaatgggtggccgaccgcatcgccgaacagtacgcggacgcc
gcggaccggggcgatgatccgccgaccgccgcggtgctgatccgccgcaacgccgacgcg
gcaccgatcgcggaggtgctgcggtcgcggggtctgccggtcgaggtggtcggtctcggc
ggtctgctccacacgcccgaggtggccgacgtcatcgcgatgctccgggtcgtcgccgac
ccgatggcgggcagtgccgccgtccggatgctgaccggggctcgctggcagatcggagcc
gccgacctgacggcgctgtcgcggcgagcgtccgaactggccatcggaacgggctacggc
accaccggcgccgtcacggattcggccgccctggccgacgccgtcggcgaggcgctgccc
ggtgaacacgcggagcaggcggggctggcggacgcgctggcggatcccggccccgccgaa
cgctattcgcaggtcggctacgcacggatcaccgcggtggcggcggagttggcgtccctg
cgcgagcggatcgggcagccgctgaccgaactggtggccgaggtcgaacgggtgctgggg
atcggcatcgaagcgcaggcgcgaacgcggcaatcggcgcgggggagtgccgggcgtgaa
catctcgacgccttcgccgacgtcgtcgccggttacgcgaaccgcacgtcggccaccgtc
acgggactgctcgccttcctgtccgccgcggaatcggtcgaaaaaggcctggcgcccggc
gaagtcgaggtggacccgcaccgcgtccaggtgctgaccgtgcactcggcgaaggggctg
gagtgggaagtggtggcggtgccgcacctcacggccggcgtctttccgtcgcggaccgcg
tccgggtcctggctcggtgcgctcggcgaactgccgccgtcgctgcgcggagaccgggcg
cggccgggggagtcggccgacggcgtgcccgtcctcgacctcgagaacctgtacgaccgg
aaagacctcgaggaggccgtgaaggcgcacaagtcggcgctggcggcccgccgactcgac
gaggaccgccggttgttctacgtcgccctcacccgcacggaacgggtgctgttcgcgtcg
ggtcaccactgggcagaatcgggaaccgagccgaaggggccgtcggagttcctcaccgaa
ctgcgcgacacggtgacggacgagcagcacgagggcatcggcaccgtcgatctctgggcg
cccgcacccgaacccgaggagcagaacccgctgaccagcacccccaagtcggcggtgtgg
ccgcgggatccgctcgggctccgccgggagtcggtcgagcgcggtgcggcgctggtcgtc
gcggcgctgaagaacgtcggcaagcaggcgccggcggacgaggacgacgatcccgagaac
tgggcggccgacgtcgacgccctcctcgcggagcgggaagcgcgtgcgaacgcccgcacc
gaggtggtgttacccggccagctgtcggtgagccagctcgtcgaactcgaggccgacccg
gacgccctggccgcccggctgcggcggccgttgccgttcccgccgaatccgctcgcccgg
cgcggcaccgcgttccacgcctgggtcgagcgccgcttcggggccacccggctgctcgac
ctcgacgagctgcccggtgccgccgacacgggtgcgggcccggatgccgacctcgcgacg
ttgcaggacgcgttcctgcgctcgccgtgggccgaccgcaacccgacggaggtcgaggtg
ccgttcgagacctcggtggccgggaccgtgttgaggggacggatcgacgcggtgttcacc
gaccccgacggcggatggacggtgatcgactggaagaccggtgccgaaccgagcgcggcc
aacgagaaggccgtcgtgatgcagctcgccgcgtaccggctggcgtgggccgaactgatg
gacgttccgatcgagcgggtgcgcgccgcattccattacgtgcggaccggacggacgatc
gcgccggaccgtctgcccggcgccgacgcgctcgcccgtctcctccgtaccgccggcgcc
ggtggtcccgacgacggtggtcccgacgacggtggtcccgaggacgacctcaggcgtgac
gccgagctttga
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integrated database retrieval system
