Rhodococcus pseudokoreensis: JWS13_11010
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Entry
JWS13_11010 CDS
T08508
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpsk
Rhodococcus pseudokoreensis
Pathway
rpsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWS13_11010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpsk03019
]
JWS13_11010
03009 Ribosome biogenesis [BR:
rpsk03009
]
JWS13_11010
Enzymes [BR:
rpsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWS13_11010
Messenger RNA biogenesis [BR:
rpsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWS13_11010
Ribosome biogenesis [BR:
rpsk03009
]
Prokaryotic type
rRNA helicases
JWS13_11010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
QSE89101
LinkDB
All DBs
Position
complement(1206311..1208077)
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AA seq
588 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTG
KTAAFAVPILSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILS
DTPEYKQVALFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDA
LTRVLEVEDFEAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERH
LLKAIEKATRQPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHD
VPLADIAAALAVQSRDGEAFLMAPEPPPAPRREREPREPRPPRRFDDGPPTRSRGPEGQE
LATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEAL
RRTRISGVLIQLQPDSGPPSGRPGRGGRDDRAGGKFQRDRDNRKRPRE
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatcgagcgtgaccccgaaccccccacttttgccgacctcgacatcgacgat
cgggtcttgaaggcactgtccgatgtgggctacgagtcgccctcgccgatccaggccgcc
accattccgccgctccttgcaggcaacgacgtcgtcggcctcgcgcagaccggcaccggc
aagaccgctgcgttcgcggtaccgatcctctcgaagatcgatctgacgcagaagtcgccg
caggcgttggtcctcgcgccgacccgcgaactggccctgcaggtcgcggaggcgttcggc
aagtactccgcccacatcccgggcctgcacgtgctgccgatctacggcggtcagagctac
ggcgtccagctgtcggggctgcggcgcggcgcgcacgtcgtcgtgggcacgcccggccgg
gtgatcgaccacctggagaagggcaccctcgacctgtccaagctctcctacctcgtcctg
gacgaggccgacgagatgctgaagatggggttccaggaggatgtcgagcgcatcctctcc
gacacccccgaatacaagcaggtcgcgctgttctcggccaccatgccgggcgccatccgc
aagatctcgaagcagtacctgcacgatccggtcgagatcacggtgaagtcgaagacgtcg
acggcatccaacatctcgcagcggtacgtccaggtggcgcaccagcgcaaactcgacgcc
ctcacacgtgtcctcgaggtcgaggacttcgaggccatgatcatcttcgtgcgcaccaag
caggccaccgaagacctcgcggaacggctgcgctcgcgcggcttctcggctgcggccatc
aacggcgacatcgtgcaggcccagcgtgagcggaccatcggccagctcaagagcggtgcc
ctcgacatcctggtggccaccgacgtggccgcgcgtggcctggacgtcgaacgcatctcc
cacgtcgtcaactacgacatcccgcacgacacggagtcgtacgtccaccggatcggccgc
accggtcgcgccgggcgcgcgggcgaggcgctgctgttcgtggcgccgcgcgaacggcac
ctgctcaaggccatcgagaaggcgacgcgtcagccgctcgccgagatgcagctgcccagc
gtcgacgacgtcaacgcgcagcgggtgtccaagttcggcgactcgatcaccgagagcctg
acgtccgacaacctggcgttgttccgcaagatgatcgaggactacgagcaggagcacgac
gttccgctcgccgacatcgccgccgccctcgcggtgcagtcgcgtgacggggaggcgttc
ctcatggcgcccgaaccgccgcccgcgccccgccgtgaacgtgaaccccgtgaaccccgc
ccgccgcgccgtttcgacgacggccccccgacccgctcgcgtgggccggaaggccaggaa
ctcgcgacgtaccgcatcgcggtcggcaagcggcaccgggtggtgccgggtgcgatcgtc
ggtgccatcgcgaacgagggcgggctgcggcgcagcgacttcgggcacatcagcatccgc
ccggaccacagcctggtggaattgcccgccgacctgtccagcgaaaccctcgaggcgctg
cgccgtacccggatctccggggtgttgattcagctgcagcccgattcggggccgccgtcg
ggccgtccgggccgtgggggccgcgacgaccgggccggtggaaagttccagcgcgaccgg
gacaacaggaaaaggccgcgcgaatag
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