Rhodococcus pseudokoreensis: JWS13_12925
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Entry
JWS13_12925 CDS
T08508
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpsk
Rhodococcus pseudokoreensis
Pathway
rpsk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWS13_12925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpsk03400
]
JWS13_12925 (mfd)
Enzymes [BR:
rpsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWS13_12925 (mfd)
DNA repair and recombination proteins [BR:
rpsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JWS13_12925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
DUF3638
IstB_IS21
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QSE89462
LinkDB
All DBs
Position
complement(1622535..1626182)
Genome browser
AA seq
1215 aa
AA seq
DB search
MSSPLIAAEPSSDTPLAGLAKIALGDAVVARVTEALGRHHLDIVAPAPVRPFVAAALAER
THLLLVTATGREADDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLA
RPDDRSYGAPLQVVVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRV
DMVGKRGEFAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLAELDIDAVIA
PPCRELLLTEDVRDRAAQLAVDNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLL
TDVLPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLKGDGIDL
GASAYRSLSQVRESAETAGLPWWTLSPLASGNGEELELAVTSAPQVRGSDELLSELFVSL
RAHVSTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGAEPARGQVGVLRGSLHDGLV
FPGGDTTPGLVVVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGR
FVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGS
DWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTV
ISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQT
FTERMAAFPVKVRGLSRFTDTGESKEIVAGMAEGEIDVVVGTHRLLQTGIRWKDLGLVVV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILT
YVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAQRIRELVPEARVVVAHGQMNED
TLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRE
RGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVA
GVGFDLYVRLVGEAVEAFRAAADGKPITTEDAPKEVRIDLPVDAHIPPDYVTSDRLRLEG
YRKLAAATELDGITAVVDELVDRYGPLPEEVRRLVSVAKLRLLAREYGLEEIAVVGTQLK
IAPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADFV
LALDGKAAGSVVMEA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccccgctcatcgctgccgagccctcgtccgacaccccgctcgccgggctggcg
aagatcgcgctgggcgacgccgtcgtcgcgcgggtgaccgaggccctcgggcggcatcac
ctcgacatcgtcgcgcccgcacccgtccggccgttcgtggccgcggccctcgccgagcgc
acccatctgcttctggtcaccgcgaccggtcgcgaggccgacgacctcaccgccgaactg
caggagatgatcggcgacgcggtggcgcagttcccgtcgtgggagacgttgccgcacgaa
cggctgtcgccgagcgccgacacggtcggtcgccgggtggaggtgctccgcaggctcgcg
cggcccgacgaccgctcgtacggggcgccgctccaggtcgtcgtcaccaccgtccgttca
ctggtgcagcccatggcgcccggtctcggtgagatcgagcccgtcacgctgcgggtgggg
gtggagcacgacttcgacgggctgatccagcggctcgtcgaaatggcgtacacgcgcgtc
gacatggtcggcaagcgcggcgagttcgccgtccgcggcggcatcctggacctgttctcg
cccaccgcggatcatccggtacgcgtcgagttctggggcgacgaggtcaccgagttgcgc
gcgttctccgtcgccgaccagaggtcgctggccgaactcgacatcgacgccgtgatcgcc
ccgccgtgccgcgaactgctcctcaccgaggacgtccgcgaccgggccgcgcagctcgcg
gtcgacaaccaggccgacgccgcgctcgtcgagatgctcgacaagatgtccgcaggcatc
ccggtggagggcatggaggcactgctgcccgtgctgcggccggggcagctgcaactgctc
accgacgtgctgcccgagagcgcgcacgtgctgctgtgcgatccggagaagatccggaca
cgcgccacggacctggtgcgcaccggtcaggagttcctcgaggcgtcgtggacggcggcc
tcgatcggcggcgccgcccccctcgacacgtcggtactgaaaggcgacggcatcgacctc
ggcgcctccgcctaccgctcgctcagccaggtccgcgaatccgcggagaccgccggtctg
ccgtggtggacgctgagcccgctcgcgtccggcaacggcgaggaactggagctggcggtc
acctcggcaccgcaggtccgcggttccgacgaactgctgtccgaactgttcgtgagcctg
cgcgcccacgtcagcacgggcgggcgcgcggtcatcgtggtcgcaggcgccggtaccgcg
catcgtgtgctcgagcgtctccgcgaggccgaggtgcccgcggcggaactcgcgcccggt
gcggagcccgcccgcggtcaggtcggggtgctgcgcggttcgctgcacgacggcctggtc
ttccccggcggcgacaccacccccgggctcgtcgtcgtcacggagtccgatctcaccggc
aaccgggtggccgcggtcggcgacggcaagcggctgccggccaagcgccgcaaccaggtg
gacccgctggccctgacggccggcgacatggtggtgcacgaccagcacggcatcggacgc
ttcgtcgagatggtcgagcggaccatcggcggcgcgcggcgcgaatacctcgtgatcgag
tacgccgccagcaagcgcggccacccgggcgaccggctgttcgtcccgatggagtcgctc
gaccagctgtcgcggtacgtcggcggcgaactgcccgcactgagcaagctcggcggctcc
gactgggccaacaccaaacgcaaggcgcgcaaggcggttcgggagatcgccggtgagctc
gtccagctgtacgcggcgcggcaggccgcgcccggtcacgcgttcggcccggacaccccg
tggcagaaggagatggaggacgcgttcgcgttcaccgagacccacgaccagctgacggtc
atcagcgaggtcaaggccgacatggagaaggcggtgccgatggaccgcgtcgtcatcggc
gacgtcggctacggcaagacggagatcgcggtgcgggccgcgttcaaggccgtgcaggac
ggcaagcaggtggcggtcctggtgccgacgacgcttctcgcccagcagcacctgcagacg
ttcaccgagcggatggcggcgttcccggtcaaggtgcgcgggctgtcccgtttcacggat
accggcgagtccaaggagatcgtcgccgggatggccgaaggcgagatcgacgtcgtcgtc
ggcacgcaccggctgctgcagaccgggatccggtggaaggacctgggcctcgtcgttgtg
gacgaggaacagcgcttcggtgtggagcacaaggaacacatcaaggcgctgcgcacccac
gtggacgttctcaccatgtcggcgacgccgatcccgcgaacgctcgagatgagcatggcg
ggcatccgtgagatgtccacgattctcacgccgccggaggagcggcaccccatcctcacg
tatgtcggcgcgtacgccgacaagcaggtcgccgcggccatccgacgggagctgctccgc
gacgggcaggtgttctacgtccacaaccgggtcagctcgatcgacaaggccgcccagagg
atccgcgaactcgtccccgaggcgcgtgtcgtcgtcgcgcacggccagatgaacgaggac
acgctcgagcggaccgtgcagggcttctgggaacgggactacgacgtgctggtgtgcacc
accatcatcgagaccggcctcgacatctccaacgccaacacgctcatcgtcgaacgtgcc
gattcgctgggcctgtcgcagctgcaccagttgcgtggtcgtgtcgggcgcagccgtgaa
cgcggctacgcgtacttcctgtacccgccggagaagccgctcaccgagacggcctacgac
cgcctggcgaccatttcgcagaactccgacctcggcgcgggcatggcggtcgcgatgaag
gacctcgagatccgtggcgccggaaacgtgctgggcgccgaacagtccggtcacgtggcg
ggggtcgggttcgacctgtacgtgcggctggtgggggaggcggtcgaggccttccgggcg
gcggccgacggcaaaccgatcaccacggaggacgccccgaaggaagtgcggatcgacctt
cccgtcgacgcgcacatccccccggactacgtcaccagcgaccgtctccggctcgagggg
taccgcaagctcgcggccgccaccgaactcgacggcatcaccgccgtcgtggacgaactc
gtcgaccggtacggcccgctccccgaggaggtccgccggctggtgtcggtggccaaactg
cgcctgctggcgcgcgaatacggcctcgaggaaatcgccgtcgtcgggacgcagctgaag
atcgcgccgatggccctgcccgactcgaagcagctgcgcctcaagcggatctacccgagt
gcgcagtaccgcgccaccaccggcatggtccagctgccgctgccccgggcaggttcgggc
gggatcggagccgagcgggtgcgcgacgtggagttgctgcagtacatcgcggacttcgtg
ctcgcgctggacggcaaggccgccgggtccgtggtgatggaggcctga
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integrated database retrieval system
