Rhodococcus pseudokoreensis: JWS13_16785
Help
Entry
JWS13_16785 CDS
T08508
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpsk
Rhodococcus pseudokoreensis
Pathway
rpsk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JWS13_16785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpsk03400
]
JWS13_16785
Enzymes [BR:
rpsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JWS13_16785
DNA repair and recombination proteins [BR:
rpsk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JWS13_16785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QSE90156
LinkDB
All DBs
Position
complement(2539343..2541640)
Genome browser
AA seq
765 aa
AA seq
DB search
MYWRREERVATAGTRQLTVEGHRLSLTNLGKVLYPESGTAKGEVIDYYSRIAPAMLPHVV
DRPATRKRWPNGVDSEPFFEKNLAASAPGWLERRALEHSDRSVHYPLLNSVAALVWAGQQ
AALELHVPQWRFDGSHRGPATRIVFDLDPGPGVGLAECAEVARAVRDLVANLGWTAYPVT
SGSKGIHLYVPLDRKLDGSGASTVAKQVATGLEKLRPELVTATMAKAVRAGKVFVDWSQN
NPSKTTIAPYSLRGRSQPYVAAPRSWDELDDPDLRQLRFEEVLERWESDGDLLAGLDPPL
EDAAALAEYRRKRDPGRTPEPMPHTVQPGNGNSFVIQEHHARRLHYDLRLERDGVLVSWA
VPKNVPTTTGENRLAVHTEDHPLEYLTFSGSIPKGEYGGGQMTIWDTGTYDTEKWRDDEV
IVQLHGEQVEGRFALIRTKGDQWLMHLMKDQTPGGSRSSELPRGLSPMLASPGTLDGLDA
DEWAFEGKWDGIRVIAEISGGELKMTSRAGNDKTGDYAQLGWLADSLEDHEVVLDGEVVA
FDERGVANFGLLQQGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLDVPPQ
LYGSAQEALDESRGKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGG
RSSGIGSVLLGVPENDGLRYIGRVGTGFTERDLQELASTLGPLETDTSPFVEDLPTADRK
GAVWVTPTLVAEVRFMDWTGSRRLRHPSWRGLRDDKSPEDVEVES
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtattggcggagggaggaacgcgtggccacagcgggaactcggcaactgacggtcgaa
gggcatcgcctgtccctgaccaacctcggcaaggtcctctacccggagtcgggcaccgcg
aagggtgaggtgatcgactactactcgcggatcgcgccggccatgctgccgcacgtcgtg
gaccgtcccgccacccgcaaacgctggcccaacggggtggacagcgagccgttcttcgag
aagaacctcgcggcctccgcaccgggatggctggagcgccgcgcactcgagcactcggat
cgttccgtgcactacccgcttctgaactcggtcgcggccctcgtgtgggcgggacagcag
gccgcactcgaactgcatgtgccgcagtggcggttcgacgggtcgcatcggggtccggcg
acccgcatcgtcttcgacctcgaccccggacccggtgtgggtctcgccgaatgcgcggag
gtggcacgggccgtgcgcgacctggtcgcgaacctcggctggaccgcgtacccggtcacc
agcggcagcaagggcattcacctgtacgtgccgctcgaccggaagctggacggttcgggc
gcgtcgaccgtcgcgaagcaggtggcgacgggactggagaaactgcgccccgaactcgtc
accgcgaccatggccaaggcggtgcgcgcgggcaaggtattcgtcgactggagccagaac
aatccgtccaagacgaccatcgccccgtactcgctgcgcgggcgctcccagccgtacgtc
gcggcgccgcgcagctgggacgaactcgacgaccccgacctccggcagctgcggttcgag
gaagtgctcgaacggtgggagtcggacggcgatctgctcgccggactcgatccgccgctc
gaggacgccgccgccctcgccgagtaccgccgcaagcgtgatcccggacggacacccgag
ccgatgccgcacacggtgcagccggggaacggcaacagcttcgtcatccaggaacatcac
gcccggcggctccattacgacctgcgactggaacgggacggggttctcgtgtcgtgggcg
gtgccgaagaacgtgccgacgacgacgggggagaatcgcctggccgtgcacaccgaggac
catccgctcgaatacctcacgttctccgggagcatcccgaagggcgagtatgggggcggc
cagatgaccatctgggacacgggcacgtacgacaccgagaagtggcgggacgacgaggtg
atcgtccagttgcacggtgagcaggtggagggccggttcgcgctgatccgcacgaagggc
gaccagtggctgatgcacctgatgaaggaccagacgccgggcgggtcgcggtcgtcggaa
ctgccgcgcgggttgtcgccgatgctcgcgagccccggcaccctcgacggcctcgacgcc
gacgagtgggctttcgaggggaagtgggacggcatcagggtgatcgccgagatcagtggc
ggcgagctgaagatgacgagccgcgcgggcaacgacaagaccggggactacgcgcaattg
ggttggctggcagattctctcgaagaccacgaggtggtcctggacggcgaagtggtcgcg
ttcgacgagcggggtgtcgcgaacttcggtctgctgcagcagggcaacgagccgcacttc
ctcgcgttcgacgtgctgtacctcgacggagtgtcgttgctgcgcaagaagtacaccgac
cggcgccgcgtcctcgaggcgctggcggccaaggtcgacgacctggacgtgccgccgcaa
ctgtacgggtccgcgcaggaagccctggacgagagtcgcggcaaggggtgggaaggtgtg
gtggccaaacgccgcgaatccgtgtacctgccgggcaagcgggggtcgagctggatcaag
gtgaagaactggcgcacacaggaagccgtgatcggcgggtggcgccgcggtcagggcggg
cggtccagcggcatcggttcggtgctgctcggcgtccccgagaacgacggcctgcgctac
atcggacgcgtcggaaccgggttcaccgaacgggatctgcaggaactcgcatccaccctg
ggaccgctcgaaaccgacaccagcccgttcgtcgaagatctgcccaccgccgaccgcaag
ggggccgtgtgggtgacccccaccctcgtcgcggaggtgcggttcatggattggaccggc
tcgcgaagactgcggcaccccagctggcgtgggctccgggacgacaagtcacccgaagac
gtcgaggtggagtcctaa
DBGET
integrated database retrieval system
