Rhodococcus pseudokoreensis: JWS13_40865
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Entry
JWS13_40865 CDS
T08508
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpsk
Rhodococcus pseudokoreensis
Pathway
rpsk03030
DNA replication
rpsk03430
Mismatch repair
rpsk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWS13_40865 (dnaE)
03430 Mismatch repair
JWS13_40865 (dnaE)
03440 Homologous recombination
JWS13_40865 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpsk03032
]
JWS13_40865 (dnaE)
03400 DNA repair and recombination proteins [BR:
rpsk03400
]
JWS13_40865 (dnaE)
Enzymes [BR:
rpsk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JWS13_40865 (dnaE)
DNA replication proteins [BR:
rpsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JWS13_40865 (dnaE)
DNA repair and recombination proteins [BR:
rpsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JWS13_40865 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QSE94513
LinkDB
All DBs
Position
7797786..7801322
Genome browser
AA seq
1178 aa
AA seq
DB search
MADSFVHLHNHTEYSMLDGAAKVGPLFEEAARLEMSAVGMTDHGNMYGASEFYNVAKKQG
IKPIIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEDLIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYFLKSAAEMRALWDDQVPGACDNTLLIAERVQPYDDVWAHHDR
MPIFPVPDGETQGTWLRKEVLRGLDRRFPDGPPEEYLARADYEIGVILEMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDISVSGITDPTHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHAC
AVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIK
ANRGIELDLDTLALDDTATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVA
GYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFAGYAFNK
SHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVLPPDVNE
SEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESIASVFNV
KIPEEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIKDGTQVTV
GGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFPQAYSVYGMDVTEDSVVLVKARVSI
RDDRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKIGALRQVLTRHPGTSDVHVRL
IGGTEVTLWKVDDVLRVEPSSALMGDLKALLGPSCLSV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtggctgactcgttcgtacatctgcacaatcacaccgagtactcgatgctcgacggtgcg
gccaaggtcggccccctgttcgaagaggccgcgcggctggagatgtcggcggtcggcatg
accgaccacggcaacatgtacggcgccagcgagttctacaacgtggcgaagaagcagggc
atcaagccgatcatcggcatcgaggcgtacgtcgcgcccgagtcccgcttcaacaccaag
cgtgtgctgtggggcgatcgcagccagaagtccgacgacgtctccggtagcggtgcgtac
acccacatgacgatggtcgccgagaacgcgaccggtctgcggaacctgttcaagctgtcc
tcgctcgcgtcgatcgagggtcagctcggcaagtgggcgcgcatggacgaagacctcatc
gccacccaccacgagggcatcatcgcgaccacgggctgcccgtccggcgagatccagacc
cggctgcgactcggccacgaccgcgaggcgctcgaggcggccgccaagtggcaggagatc
tggggcaaggacaacttcttcctcgagctgatggaccacggactgtcgatcgagcgacgc
gtgcgtgagggcctcctcgagatcagcaagaagctcgaaatcccgccgctcgccaccaac
gactgccactacgtcacgaaggaagcggcggagaaccacgaggcgctgctctgcatccag
accggcaagacgctgtccgaccccacccggttcaagttcgacggtgacggctacttcctc
aagtccgccgcggagatgcgggccctgtgggacgaccaggtacccggcgcgtgcgacaac
accctgctcatcgccgagcgtgtccagccgtacgacgacgtgtgggcgcaccacgaccgg
atgccgatcttcccggtccccgacggcgagacgcagggcacctggctgcgcaaggaggtc
ctccgcgggctggaccgccggttccccgacggaccgcccgaggagtacctggcccgcgcc
gactacgagatcggcgtcatcctggaaatgggtttccccgcctacttcctcgtcgtcggc
gacctcatcaaccacgcgcgtgaggtcggcatccgggtcggccccggccgaggctcggcc
gccggttcgctcgtcgcctacgcgatgggcatcaccaacatcgaccccatcccgcacggc
ctgctgttcgagcggttcctgaaccccgagcgcgtgtccatgcccgatatcgacatcgac
ttcgacgatcgccgtcgcggcgagatggtgcgctacgcgacggacaagtggggcagcgac
cgcgtcgcccaggtcatcacgttcggcaccatcaagacgaaggcggccatcaaggactcc
gcccgagtccagttcggtcagcccggtttcgcgatcgccgaccagatcacgaaggcgctg
ccgccgccgatcatggccaaggacatctcggtgtccggcatcaccgacccgacccacgag
cgctacaaggaagcggtggaggttcgcgccctcatcgactccaacccggacgtcgcgaag
atctaccagacggccaagggactcgagggcctgatccgaaacgccggcgtccacgcctgc
gcggtgatcatgtcgtccgaaccgctgatggacgcgattcccgtgtggaaacgcgcccag
gacggcgccatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcgggctgcggaacctcaccgtcatcggtgacgccatcgacaacatcaag
gcgaaccgggggatcgaactcgatctcgacaccctcgcgctcgacgacacggccacgtac
gaactgctctcgcgcggtgacactctcggggtgttccagctcgacggcagcgcaatgcgc
gacctgctgcgccgcatgcagcccaccggcttcgaggacatcgtcgcggtgctcgcgctg
taccggcccggtccgatgggcatgaacgcgcacaacgactacgccgaccgcaagaacggg
cggcaagaggtcaaacccatccacccggaactcgaggagcccctgaaggagatcctggcc
gacacgtacggcctgatcgtctaccaggagcagatcatgcagatcgcgcagaaggtggcc
gggtactcgctcggacaggccgacattctccgccgcgccatgggtaagaagaagctgtcg
gtgctggaggaggcgtacgcaggcttccgcgagggcatgctcgcgaacgagttctccgag
cccgccatcaaggcgctgtgggacaccatcctcccgttcgccgggtacgcgttcaacaag
tcgcacgccgccggatacggcctggtgtcgttctggaccgggtacctcaaggccaactat
ccggccgagtacatggccggtctgctcacctcggtcggtgacgacaaggacaaggccgcc
gtctacctcgcggactgccgcaagatgggcatcaccgtgctgccgccggacgtcaacgaa
tcggaggtcaacttcgcctccgtcggagaggacatccggttcggcatgggcgccgtccgc
aacgtcggtgccaacgtggtgggctcgatcatcaaggcgcgcaaggagaagtccaagttc
gtcgacttctccgactacctcaacaagatcgacgctgccgcctgctccaagaaggtcacc
gaatcgctgatcaaggcaggcggattcgactcgctgggccacccgcgcaaggggctcatg
ctcgtccacgccgacgccatcgacgcggtgatgggcaccaagaaggcggaggcgatcggc
cagttcgacctgttcggcggcgacgacgccgacgagtcgatcgcgtcggtgttcaacgtg
aagatccccgaggaggagtgggactccaagcaccggttggcgctggaacgggaaatgctg
ggactgtacgtgtccgggcacccgctcaacggcgtcgagcacgtgctgtcggcgcagtcc
gacaccgcgatcccgaccatcctcgaaggcgacatcaaggacggcacccaggtcaccgtc
ggcggcatcctcgcgtcggtgaaccggaggatcaacaagaacggtctcacctgggcgtcc
gctcagctcgaggacctgaccggtggtatcgaggtgctgttcttcccgcaggcctactcg
gtgtacgggatggacgtcacggaggactccgtggtgctcgtcaaagcgcgcgtgtcgatc
cgcgacgaccggatctcactcatcgccaacgaccttgcggtgccggacctctcggcggtg
ggggtcgcgaagccgctggcggtcagcctgccgctgcgtcagtgcaccaaggacaagatc
ggcgcgctgcggcaggtgctcacccgccatccgggcacgtcggacgtgcacgtgcggttg
atcggcggcaccgaggtcacgttgtggaaggtggacgacgtgctccgggtggaaccgtcg
tcggcgttgatgggcgacctcaaggcgctgctcggaccgagctgcctgtccgtgtga
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integrated database retrieval system
