Rhodococcus pseudokoreensis: JWS13_41275
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Entry
JWS13_41275 CDS
T08508
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rpsk
Rhodococcus pseudokoreensis
Pathway
rpsk03030
DNA replication
rpsk03410
Base excision repair
rpsk03420
Nucleotide excision repair
rpsk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWS13_41275 (polA)
03410 Base excision repair
JWS13_41275 (polA)
03420 Nucleotide excision repair
JWS13_41275 (polA)
03440 Homologous recombination
JWS13_41275 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpsk03032
]
JWS13_41275 (polA)
03400 DNA repair and recombination proteins [BR:
rpsk03400
]
JWS13_41275 (polA)
Enzymes [BR:
rpsk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JWS13_41275 (polA)
DNA replication proteins [BR:
rpsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JWS13_41275 (polA)
DNA repair and recombination proteins [BR:
rpsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JWS13_41275 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWS13_41275 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_5
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
QSE94590
LinkDB
All DBs
Position
7880946..7883690
Genome browser
AA seq
914 aa
AA seq
DB search
MSPATTPRSTTSPASGAVAPSDDRPTLMLLDGHSLAFRAFYALPAENFKTHSGQVTNAVY
GFTSMLINLLRDEQPTHVAAAFDVSRQTFRAEKFPEYKANRSKAPDEFKGQVEITKDVLG
ALGIPVMAEEGFEADDIIATLTTQAEVLGYRVLVVTGDRDSLQLVTDGVTVLYPKKGVSD
LTRFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVD
NVDKVRGKVGDALRENLPNVLLNRELTEMVRDVPLPYTPDQLMLVQWDREKIHALFDDLE
FKVLRDRLFATLAPVEAEAEEGFEVRGSALEPGAVADWLSAHASTGERSGVSVVGTRTPY
GGDVTAIAIAAADGEGAYIATASATPEDEKALGDWLADADQPKALHEAKWAMHALRGRGW
ALGGLTSDTALAAYLVRPGQRTFNLDDLSLRYLHRELRVEETGQEQLSLLDDADQVDAEA
AETEILSARAVLDLAAALDTELENIESTALLSEMELPLLAVLADIEASGIAVDGDHLHDL
QSRFAAEVSAAAEAAYGVIGKQINLGSPKQLQVVLFDELEMPKTKKTKTGYTTDAEALQN
LFEKTSHPFLEHLLAHRDATRLKVTVDGLLKTVADDGRIHTTFNQTVAATGRLSSTEPNL
QNIPVRTDAGRQIRDGFVVGEGFDSLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHS
FVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLATQLKISTEEAKSQMEAYFARF
GGVRDYLHEVVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGTAADI
IKVAMIDVQRSLREAGLKSRMLLQVHDELVLEVVEAERDRVEQLVRDKMASAIELSVPLD
VSVGTGRSWDAAAH
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
gtgagccctgcaaccaccccccggtccaccacgtcccccgcgtccggcgcagtcgcgccg
tccgacgatcgccccaccctgatgctgctcgacggccattcgctggccttccgtgcgttc
tacgccctgcccgccgagaacttcaagacacacagtggtcaggtcaccaacgccgtctac
gggttcacgtcgatgttgatcaacctgctgcgcgacgaacagcccacccatgtggcggcg
gcgttcgacgtgtcccggcagacgttccgggccgagaagttccccgagtacaaggccaat
cgcagcaaggccccggacgagttcaaggggcaggtcgagatcacgaaggacgtcctcggg
gccctcggcatcccggtgatggcggaggagggcttcgaggccgacgacatcatcgccacg
ctcaccacccaggcggaggtgctcgggtaccgcgtcctcgtggtgaccggcgaccgggac
tcgctccagctggtcaccgacggggtgacggtgctctacccgaagaagggcgtctcggac
ctcacccggttcacgcctgcggcggtcgaggagaagtacgggctcacacctgctcagtac
cccgacttcgcggccctgcgcggcgacccgagcgacaacctgccgggcatcccgggtgtg
ggggagaagaccgccaccaagtggatcaaggaatacggggatctcgtcggcctggtcgac
aacgtcgacaaggttcgcggcaaggtcggtgacgcgctgcgggagaacctgccgaacgtg
ctgctcaaccgggagctcaccgagatggtgcgcgacgtcccgctgccctacaccccggat
cagctgatgctcgtgcagtgggatcgggagaagatccacgcgctgttcgacgacctcgag
ttcaaggtgctgcgcgaccggctgttcgccacgctcgcccccgtcgaagccgaggcggag
gagggcttcgaggtgcgcggcagtgcgctcgaaccgggtgcggtcgcagactggctgtcg
gcgcacgcgtcgacgggcgagcggtccggtgtgtcggtggtcggcacccgcaccccgtac
ggcggcgacgtgacggcgatcgcgatcgcggccgccgatggcgagggcgcgtacatcgcc
accgcgtccgccaccccggaagacgagaaggcgctcggcgactggctcgcggacgccgat
cagccgaaggctctgcacgaggccaagtgggcgatgcacgcgctgcgcggacgcggctgg
gcactcggcggtctcaccagcgacaccgcgctcgcggcgtacctggtgcgccccgggcag
cggacgttcaacctcgacgacctgtcgctgcgctacctgcacagggaactgcgggtggag
gagacggggcaggagcagctgtcgctgctcgacgacgccgatcaggtcgacgccgaagcc
gccgagaccgagatcctcagtgcccgcgccgtcctcgacctcgcggccgcgctcgacacg
gaactcgagaacatcgagtcgacggccctgctgtccgagatggagttgccgctgctggcg
gtgctggccgacatcgaggcgtccggtatcgcggtcgacggcgaccacctgcacgacctg
cagagccggttcgcggcggaggtgtccgcggcggcggaggcggcctacggggtcatcggc
aagcagatcaacctcgggtcgcccaagcagctgcaggtcgtgctgttcgacgagctggag
atgcccaagacgaagaagacgaagaccggctacaccacggacgccgaggcgctgcagaac
ctgttcgagaagacgtcgcacccgttcctcgagcaccttctcgcgcaccgcgacgcgacg
cgcctgaaggtgaccgtcgacggtctgctgaagacggtcgccgacgacgggcggatccac
acgacgttcaaccagaccgtcgccgccaccggccggctgtcgtccaccgagcccaacctg
cagaacatcccggtgcgcacggacgcgggccgtcagatccgcgacgggttcgtcgtcggg
gagggcttcgactcgctgctcaccgccgactacagccaaatcgagatgcggatcatggcg
cacgtgtccggcgacgaggggctgatcgaggcgttcaacaccggcgaggacctgcacagc
ttcgtcggtgcccgggcgttcggcgtgccgatcgaggaggtcacccccgaactgcgccgc
cgcgtgaaggcgatgtcgtacgggctggcgtacgggctcagcgcgttcggtctggcaacg
cagctcaagatctcgaccgaagaggccaaatcgcagatggaggcgtacttcgcccggttc
ggcggagtgcgggactacctgcacgaggtcgtggaacaggcccgcaaggacggctacacg
tcgacgctgtacgggcgccgccgctacctgcccgacctcaccagcgacaaccggcagcgg
cgggaggtcgccgagcgcgccgcgctcaacgcccccatccagggcacggccgccgacatc
atcaaggtcgcgatgatcgacgtgcagcgctcactgcgtgaggcgggattgaagtcgcgc
atgctgctgcaggtgcacgacgaactggtgctcgaggtcgtcgaggcggaacgggaccgg
gtggaacaactggtccgcgacaagatggcctccgccatcgaactgtcggtgccgctcgac
gtgtccgtcggcaccggccgcagttgggacgccgccgcacactag
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