Rhodococcus pseudokoreensis: JWS13_44870
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Entry
JWS13_44870 CDS
T08508
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rpsk
Rhodococcus pseudokoreensis
Brite
KEGG Orthology (KO) [BR:
rpsk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpsk03032
]
JWS13_44870
03400 DNA repair and recombination proteins [BR:
rpsk03400
]
JWS13_44870
Enzymes [BR:
rpsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JWS13_44870
DNA replication proteins [BR:
rpsk03032
]
Prokaryotic type
DNA Topoisomerases
JWS13_44870
DNA repair and recombination proteins [BR:
rpsk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JWS13_44870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QSE95235
LinkDB
All DBs
Position
8680153..8681160
Genome browser
AA seq
335 aa
AA seq
DB search
MRLRHSDPSSQGIRRRRRGRGFSYETPDGSSTVSDDDRARIDALVIPPAWRKVWICPHAN
GHIQAVGVDAAGRRQYLYHERWRQERDEEKYDRVLSLAARLPEWREHVGEALRRRGRGRY
RVEAVALRMLDRGVLRIGGEEYAEEHGSRGVATLLREHVTVRADEVQLDFPAKSGVQRTL
AFEDAALATALRSLLRADAPPSDRLLVYRRGGACFEVHADDVNARFKDVAGDEYTVKDLR
TWHATVIAAVAFADIGAASSKRARSSAETEVMREVAGVLGNTPQVARTSYVDPRVITAFD
SGHTIASALRRARRASSEDAEREVVERAVIRLLGR
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgcgattgcgccacagcgatccgtcctcgcagggcattcgccggcgacggcggggccgg
ggcttctcgtacgagacgcccgacgggtcgtccacggtgtcggatgacgacagggctcgg
atcgacgctctggtcatcccgcctgcctggcggaaggtgtggatatgcccgcacgcgaac
ggtcatattcaggcggtcggtgtggatgccgcgggacgccgccagtacctgtaccacgaa
cggtggcggcaggaacgcgacgaggagaaatacgaccgggtgctgtcgctcgccgcgcgc
ctgccggaatggcgggagcacgtgggggaagcgctgcggcgccgaggcagagggaggtac
cgcgtcgaggcggtcgcgctgcggatgctcgatcgcggtgtcctgcggatcggcggcgag
gagtacgccgaggagcacggttcacggggtgtcgcgacactgctgcgcgaacacgtcacc
gtgcgggccgacgaagtgcaactcgacttcccggccaagagcggggttcagcggactctg
gcgttcgaagacgccgccctcgcgaccgccctgcgttcgctattgcgtgcggacgcgccg
ccgagcgatcggcttctcgtctatcgcaggggcggcgcgtgtttcgaggtacatgccgac
gacgtcaatgcccggttcaaggacgtggcgggggacgagtacacggtcaaggatcttcgg
acctggcacgcgaccgtgatagccgcggtggcgttcgcggacatcggtgcggcctcgtcg
aagcgggcccgcagttccgcggaaaccgaggtgatgcgcgaggtcgcgggcgtgttgggc
aataccccgcaggtcgcgcggacgtcctacgtcgatccgcgggtgatcaccgcgttcgac
tcggggcacaccatcgcgtcggcgttgcgacgagcccggcgggcgtcgtcggaggacgcc
gagcgggaagtggtggagagggcggtgatccggttgctggggcgatga
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