Rhodopseudomonas palustris TIE-1: Rpal_0052
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Entry
Rpal_0052 CDS
T00722
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt02020
Two-component system
rpt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Rpal_0052
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rpal_0052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpt03021
]
Rpal_0052
Transcription machinery [BR:
rpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rpal_0052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Arg_repressor
ETF
Motif
Other DBs
NCBI-ProteinID:
ACE98614
LinkDB
All DBs
Position
55551..57197
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AA seq
548 aa
AA seq
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MALSQRLEFRQTQSLVMTPQLMQAIKLLQLSNLDLAAFVEDEIEKNPLLDRAGDNAEPPV
AGEASAEGAEGGGEFGGSGGEDLGGEGTSDFVDPAGASAFEPGTEEWMHRDLGSRSDIEQ
TLDTGMENVFPEEPAEAAARAAQDAAPASYTEWGGGASSDEGYNLEAFVAAESSLADHLA
EQLAVAVTTPSQRLIGQYLIDLVDDAGYLPADLGDAAERLGASQAEVEALVQVLQTFDPP
GICARNLSECLAIQLRERDRYDPAMQALVEHLDLLAKRDVASLRKICGVDDEDLVDMIGE
IRHLDPKPGLKFGSSRVQTVVPDVFVRPGPDGGWLVELNSDTLPKVLVNQSYYSELSKTI
RKDGDKSYFSDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVKHLRPLNLKAV
ADAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHQIRQLID
SEDPSAILSDDTIVERLREAGIDIARRTVAKYREAMRIPSSVQRRRDKQNMLGTQAGSAS
RSRDTAPA
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgcaacgtctcgaattccgccagacccagtctctggtgatgaccccgcaa
ctgatgcaggcgatcaagctgcttcagctgtcgaatctcgacctcgcggctttcgtcgag
gacgagatcgagaagaacccgttgctcgatcgcgccggcgacaatgcggaaccgccggtg
gccggtgaggcatcggcggaaggcgcagagggcggcggtgaattcggcgggagcggcggc
gaggatctcggcggcgagggcacgtcggatttcgtcgatcccgcaggcgccagcgcattc
gagcccggcaccgaagaatggatgcatcgcgatctcggcagccgcagcgatatcgagcag
accctcgataccggtatggaaaacgttttccctgaagagccagccgaagccgcggcccgc
gccgcgcaggacgccgcaccggcctcctataccgaatggggcggcggggcttcatcggat
gagggctacaatctcgaagccttcgtggccgctgaatcgtcgctggccgatcatctcgcc
gaacagctcgcggtcgcggtaacgacgccatcgcagcggctgatcggacaatacctgata
gatctggtcgatgatgccggctatctgccggctgatctcggcgatgccgccgaacggttg
ggcgcgagccaggccgaagtggaagcgctggtgcaggtgctgcagaccttcgatccgccc
ggtatctgcgcccgcaacctgagcgaatgcctcgccatccaactgcgcgagcgcgaccgc
tacgatccggcgatgcaggcgttggtcgagcacctcgacttgctggccaaacgcgacgtc
gcgtcattacgcaagatctgcggcgtcgacgacgaagacctcgtcgacatgatcggcgag
attcgtcatctcgatccgaagcccggcctgaagttcggctcgtcgcgggtgcagacagtt
gtgcccgacgtcttcgtccgtcccggccccgacggcggttggctggtcgagctcaacagc
gacacactgccgaaggtgctggtcaaccagtcatattattccgagctgtcgaagacgatc
cgcaaggacggcgacaagtcgtatttctccgactgcctgcagaacgctacctggctggtg
cgcgcgctcgatcagcgcgcccgcaccatcctgaaggtggcgaccgagatcgtgcgccag
caggacggcttcttcacccacggcgtcaagcatctgcggccgctgaatctcaaggccgtg
gctgacgcgattcagatgcacgaatcgacggtgtcgcgcgtcaccgccaacaaatacatg
gcgaccaatcgcggcactttcgaacttaagtatttcttcaccgcgtcgatcgcgtccgcc
gacggcggcgaggcgcactcggccgaagcagtacggcaccagatccgccaactgatcgac
agcgaagatccgtcagcgatcctgtcggatgatacgatcgtcgaacggcttcgcgaggcc
ggcatcgacatcgcgcgccgcaccgtcgcgaaatatcgcgaagcgatgcgcattccctct
tcagtgcagcgccgtcgcgacaagcagaacatgctgggcacacaggccgggagcgcaagc
cgctcccgcgacacagccccagcttga
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