Rhodopseudomonas palustris TIE-1: Rpal_0216
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Entry
Rpal_0216 CDS
T00722
Name
(GenBank) succinate dehydrogenase, flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt00020
Citrate cycle (TCA cycle)
rpt00190
Oxidative phosphorylation
rpt00650
Butanoate metabolism
rpt00720
Other carbon fixation pathways
rpt01100
Metabolic pathways
rpt01110
Biosynthesis of secondary metabolites
rpt01120
Microbial metabolism in diverse environments
rpt01200
Carbon metabolism
Module
rpt_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rpt_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rpt_M00149
Succinate dehydrogenase, prokaryotes
rpt_M00982
Methylcitrate cycle
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
Rpal_0216
00650 Butanoate metabolism
Rpal_0216
09102 Energy metabolism
00190 Oxidative phosphorylation
Rpal_0216
00720 Other carbon fixation pathways
Rpal_0216
Enzymes [BR:
rpt01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
Rpal_0216
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
GIDA
Pyr_redox_2
DAO
HI0933_like
Thi4
Motif
Other DBs
NCBI-ProteinID:
ACE98776
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Position
complement(234650..236473)
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AA seq
607 aa
AA seq
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MAANVNGAPAAGGYAYPIEDHTYDVVVVGAGGAGLRAVVGCSEAGLRTACITKVFPTRSH
TVAAQGGISASLGNMHKDDWRWHMYDTVKGSDWLGDQDSIEYMVRNAPEAVYELEHWGVP
FSRTEDGKIYQRPFGGMTMDFGKGQAQRTCAAADRTGHAMLHTMYGQALRHSAEFYIEFF
AIDLIMDDQGCCRGVVALKLDDGTIHRFKAQTTILATGGYGRAYASCTSAHTCTGDGGAM
ALRAGLPLQDMEFVQFHPTGIYGSGCLVTEGARGEGGYLVNSEGERFMERYAPSAKDLAS
RDVVSRAMTIEMREGRGVGKKKDHIFLHLDHLAPEVLHERLPGISESARIFAGVDVTREP
IPILPTVHYNMGGIPTNFHGEVVTKKDGDDNAVVPGLMAIGEAACVSVHGANRLGSNSLI
DLVVFGRAAALRCAEKLVPNGKQPELPASSADMSLSRLDKYRYAKGGTPTAKLRERMQHV
MQNNCAVFRTGEVLAEGKELIANVHGSVGDVGVSDRTLVWNSDLVETLEFDNLIVQAVVT
MNSAANRTESRGAHAREDFPDRDDANWMKHTLAWIGDKGDVTIDYRPVHDYTMTNDVQYI
PPKPRVY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaacgtcaacggcgccccggcggcgggcggctacgcctatccgatcgaggac
cacacctacgacgtcgtggtggtcggcgccggcggcgcggggttgcgcgcagtggtcggc
tgcagcgaagcgggcctgcgcaccgcctgcatcaccaaggtgttcccgacccgctcgcac
accgtggctgcccagggcggcatctcggcctcgctcggcaacatgcataaggatgactgg
cgctggcacatgtacgacaccgtgaaggggtcggactggctcggcgatcaggactcgatc
gagtacatggtccgcaacgcgccggaagccgtgtacgaactcgagcattggggtgtgccg
ttctcgcgcaccgaagacggtaagatctatcagcggccgttcggcggcatgacgatggat
ttcggcaagggccaggcgcagcgcacctgcgcggccgccgaccgcaccggccacgccatg
ctgcacacgatgtacggtcaggcgctgcgccactcggctgagttctacatcgagttcttc
gccatcgacctgatcatggacgatcagggctgctgccgcggcgtcgtggcgctgaagctc
gacgacggcaccatccatcgtttcaaggcgcagaccaccattctggcgaccggcggctac
ggccgtgcctacgcctcctgcacgtcggcgcacacctgcaccggcgacggcggcgcgatg
gcgttgcgcgccggcctgccgctgcaggacatggagttcgttcagttccacccgaccggc
atctacggctcgggctgtctggtgaccgaaggcgcccgcggcgagggtggctatctggtc
aactccgagggcgagcgcttcatggagcgctatgcgccgtcggccaaggacctcgcctcg
cgcgatgtcgtttcgcgcgcaatgaccatcgaaatgcgcgaaggtcgcggcgtcggcaag
aagaaggaccacatcttcctgcacctcgaccatctggcgccggaagtgctgcacgagcgg
ctgccgggcatctcggaatcggcacggatcttcgccggcgtcgacgtcacccgcgagccg
atcccgatcctgccgaccgtgcactacaacatgggcggcatcccgacgaacttccacggc
gaagtcgtgaccaagaaggacggcgacgacaacgcagtggtgccgggcctgatggcgatt
ggcgaagcggcctgcgtgtcggtgcacggcgccaaccgcctcggttccaactcgctgatc
gacctcgtggtgttcggccgcgccgcagcgctgcgctgcgccgagaagctggtgccgaac
ggcaagcagcctgaactgccggccagctccgccgacatgtcgctgtcgcggctcgacaag
tatcgttacgccaagggcggcaccccgaccgccaagctgcgcgagcggatgcagcacgtg
atgcagaacaactgcgcggtgttccgcaccggcgaagtgctcgccgagggcaaggaactg
atcgccaacgtccatggcagcgtcggcgacgtcggcgtgtcggatcgcacgctggtgtgg
aattccgatctcgtcgagacactggaattcgacaatctgatcgtccaggcggtggtgacg
atgaactccgccgccaaccgcaccgagagccgcggcgcccacgcccgcgaagacttcccg
gatcgcgatgacgccaactggatgaagcacacgctggcctggatcggtgacaagggcgac
gtgaccatcgattatcggccggtgcacgactacacgatgaccaacgacgtccagtacatt
ccgccgaagccgcgggtgtattga
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