Rhodopseudomonas palustris TIE-1: Rpal_0536
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Entry
Rpal_0536 CDS
T00722
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpt03019
]
Rpal_0536
Enzymes [BR:
rpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rpal_0536
Messenger RNA biogenesis [BR:
rpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rpal_0536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_C
HA2_N
CON_HrpB
Flavi_DEAD
ResIII
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACE99095
LinkDB
All DBs
Position
complement(583921..586398)
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AA seq
825 aa
AA seq
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MTRTFDTPLPIDDALDELTAALEASNTAVLVAPPGAGKTTRVPLALLDAPWLRNQKIIVL
EPRRIAARASAERMAKTLSEKAGERIGYRVRFGSKVSRATRIEVVTEGIFTRQILDDPEL
NGVAAVLFDEFHERSLDADLGLALARDAQQGLREDLRILVMSATIDGARVARLLGDAPVV
ESLGRAFPVETRYLGRRSDAPLERLMAEAIAQALRAETGSVLAFLPGAAEIRRTETMLRE
RVQDPGVEIVPLFGALDAAVQDRAIQPAPKGQRKVVLATSIAETSLTIEGVRIVVDCGLS
RVPRYEPDLGLTRLETVRASRAAVDQRRGRAGRIEPGVCYRLWDEPQTASLPAYTQPEIL
SADLSSLLLDLAQWGVADPSSLAFLDPPPQPALKEARELLGELGALDPDGRITDEGRSLR
AMALPPRLARMIVDAAHHGCAEDAAEVAAILTERGLGGDSADLDHRRDQFRRDRSQRASS
ARQMAQRWAAQAASSSPSPQDAFELSSGVLLAFAFPDRVARNRGNGSFTLANGRGAAVEQ
TSALARAPYLAVGELTGSAAQGRILLAAPITLSEIELHFGDQITDADEVSFDRSAMALRA
RRRRALHAITLSEAPLALTPSDQTARVLAEGLVVAGLDRLPWSKQLQQWRGRVMFLRKAE
GDPWPDLSDAALADSRENWLVPALFDKTGLKDFSASDLSDALMNLLPWELRARLDREAPT
HFEAPTGSKLPIDYEAEQGPTIAVRLQELFGLTTHPSVAGGAVPLVLELLSPAHRPVQVT
RDLPGFWRGSYAGVRADLRGRYPRHPWPEDPASAPPTRRAKPKGT
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
ttgacccgcaccttcgacaccccgctgccgatcgacgacgctctcgacgagctcaccgcc
gcgcttgaggcgagcaataccgccgtgttggtcgcgccccccggcgccggcaagaccacc
cgcgtgccgctcgcgttgctcgatgcaccgtggctgagaaaccaaaagatcatcgtgctg
gagccacggcggatcgccgcccgcgccagcgccgagcggatggcgaagacgctgagcgag
aaggctggcgagaggatcggttaccgcgtccgattcggctccaaggtgtcacgcgccacc
cggatcgaggtcgtcaccgagggtattttcacccgccagatcctcgacgacccggaactc
aacggcgtcgccgcggtgctgttcgacgagtttcacgaacgctcactcgacgccgatctc
ggcctcgccctggctcgcgacgcccagcaaggtctgcgcgaagatctgcgaatcctggtg
atgtcggccaccatcgacggcgcccgcgtcgcccggctgctcggcgatgcgccggtggtc
gaaagcctcggccgggcgtttccagtcgagacccgctatctcggccgccgcagcgacgcg
ccgctagagaggctgatggccgaggcgatcgcgcaggcgctgcgggcggaaaccggatcg
gtgctggcgtttctgcccggcgccgccgagatccggcgcaccgagacgatgctgcgcgag
cgtgtgcaggacccgggggtcgagatcgtgccgctgttcggcgcgctcgacgccgccgtg
caggaccgcgccatccagccggcgccgaagggccagcgcaaagtggtgctggcgacctcg
atcgccgagacctcgctgacgatcgaaggcgtacggatcgtggtcgattgcggcttgtca
cgggtcccccgttacgagcccgacctcggcctcacccggctcgagaccgtccgcgcctcg
cgcgccgcggtcgatcagcgccgcggccgcgccggccgtatcgagcccggcgtgtgctac
cgactttgggacgagccgcagaccgcgtcgctgccggcctatacgcaacctgaaatccta
tccgccgatctgtcatcgctgctgctcgacctcgcccaatggggcgttgccgatccgtcg
tcgctggcgtttctcgatccgccgccccagccggcgctgaaggaagcccgtgagctgctc
ggcgagctcggcgcactcgacccggacggccgcatcaccgacgagggccgcagcctgcgg
gcgatggcgctgccgccccggttggcgcggatgatcgtcgatgccgcccaccacggctgc
gccgaggacgccgccgaagtcgccgcgattctcaccgagcgcgggctgggcggcgatagc
gccgacctcgaccatcgccgtgatcaattccgccgcgaccgctcgcagcgcgccagcagc
gcccggcagatggcgcagcgctgggcggcgcaggccgcatcgtcatctccctccccgcaa
gacgcattcgagctctcctccggcgtcctgctcgccttcgccttcccggatcgtgtcgcc
aggaaccgtggcaatggcagcttcacgctcgccaatggccgcggcgccgcggttgagcag
acttccgcgctggcgcgcgcgccgtatctggcagtcggtgagctaaccggcagcgccgca
cagggccgcatcctgctggcggcgccgatcacgctgtccgagatcgaactgcatttcggc
gatcagattaccgacgccgacgaggtgagtttcgaccgctccgcgatggcgctccgcgct
cggcgccgccgcgccttgcatgcgatcacgctgtccgaagcaccgctggcgctgacgccg
tccgatcagaccgcgcgcgtgctcgccgagggccttgtcgtggccggactcgaccggctg
ccgtggtcgaagcagcttcagcaatggcgcggccgggtgatgtttctgcgcaaggccgag
ggtgacccatggcctgatctgtcggatgccgccctcgccgactcgcgcgaaaattggctg
gtgcccgccctgttcgacaagaccggcctgaaggatttttcggcctccgacctgtcggac
gccctgatgaatctgttgccgtgggagctgcgcgcccggctcgaccgcgaggcgccgacg
catttcgaggcgccgaccggctcgaagctgccgatcgattacgaagccgaacagggcccc
accatcgcggtgcggctgcaggaattgttcggcctcaccacccatccatcggtcgcaggc
ggcgcggtgcctctggtgctggaactgctgtcgccggcgcaccgtcccgtgcaggtcacg
cgcgacctgccggggttctggcgcggctcgtatgccggagtgcgggccgatctgcgcggc
cgctatccgcgtcacccctggcccgaagaccccgcctcggcgccgccgacccgccgcgcc
aagccgaaaggcacctga
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