KEGG   Rhodopseudomonas palustris TIE-1: Rpal_0875
Entry
Rpal_0875         CDS       T00722                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
rpt  Rhodopseudomonas palustris TIE-1
Brite
KEGG Orthology (KO) [BR:rpt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpt03400]
    Rpal_0875
Enzymes [BR:rpt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Rpal_0875
    5.6.2.6  RNA 3'-5' helicase
     Rpal_0875
DNA repair and recombination proteins [BR:rpt03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Rpal_0875
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C Cas3-like_C_2
Other DBs
NCBI-ProteinID: ACE99432
LinkDB
Position
929226..931952
AA seq 908 aa
MSLADSSLDLLPDRFRRWFAERGWAPRDHQLALLEKARVQRSALLIAPTGAGKTLAGFLP
SLVELSGAAPNLSPFAGRGRLAGVAGESGEGGDESPPAEVALTTATPPHPAQQAALAAPP
SPRARGDGMVSRSGGLHTLYISPLKALAVDIARNLETPIAEMKLPIRVETRTGDTPVSRR
TRQRKYPPDILLTTPEQLALLLASDDAPYLFGTLRRIVLDELHALVTSKRGDLLSLGLAR
LWRIAPQLRAIGLSATVADPDELARFLVPQPFVPSPARGEGDERAVDQADIVVATGAAPP
IVEMLDTKERLPWAGHSARHALPEIYDLIRRNTTTLVFVNTRSQAEMLFQELWRINDDNL
AIALHHGSLDVGQRRKVEDAMAAGRLRGVVCTSSLDLGVDWGDVDLVVNVGAPKGSSRLM
QRIGRANHRIDEASRAVLVPSNRFEVLECVAAIDAVAENAQDTPPQRKGALDVLAQHILG
CACGEPFVADDLYAEIRSAAPYADLSRGDFDDTLDFVASGGYALKSYERFARIKQDKQGK
WRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSSRAKGGGSTGAIARGGRMLGQIEEGFIE
GLTAGDTFVFGGEVVRYEALMEDQVYVSRAHDKDARVPSYMGGKFPLSTYLAERVRGLLA
DKRSWTGLPDQVRDWLALQTEASQVPGRRELVIETFPRAAKYYLVCYPFEGRLAHQTLGM
LLTRRLERARARPLGFVANEYALAVWGLSDMSQMIRQGRLDLDALFDPDMLGDDLEAWLA
ESALMKRTFRNCAIISGLIARRFAGEEKSRRQVLFSTDLVYDVLNKHQPDHVLLRAARAD
AATGLLDLRRLSDMLMRINGRIVHKELDRVSPLAVPVMLEIGREAVYGEASDVLLAEAAD
ELVREAMS
NT seq 2727 nt   +upstreamnt  +downstreamnt
gtgagcctcgccgattcctctcttgatctgctgcccgaccggttccgccgctggttcgcc
gagcgcggctgggcgccgcgcgatcatcagctcgcgctgctggaaaaggcacgggtgcaa
cgctccgcgctgctgatcgcgccgaccggcgccggcaagaccctggctggtttcctccca
tcgctggtggaactgagcggggcggcacctaacctctccccgttcgcggggagaggtcga
cttgctggcgtagccggcgagtcgggggaggggggggatgaatctccacctgcggaagtg
gcgctcacgaccgcgacgcctcctcatccggcgcagcaagctgcgcttgccgcgccacct
tctccccgcgcgcggggagacggaatggtctcgcggagcggcgggctgcatacgctctac
atctcgccactcaaggcgctcgcagtcgacatcgcgcgtaatctcgaaacgccgatcgcg
gagatgaagctgccgatccgcgtcgaaacccgcaccggcgatacgccggtgtcgcggcgg
acacggcagcgcaaatatccgcccgacatcctgctgacaacgccggagcagctcgcgctg
ctgctcgcctccgacgatgcgccctatctgttcggcaccctgcggcggatcgtgctggac
gaactgcacgcgctggtgacgtcgaagcgcggcgatctgctatcgctcgggctcgcccgg
ctgtggcggatcgcgccacagctccgcgccatcggtctgtcggcgacggtcgccgatccc
gacgaactcgcccgctttctggtgccgcagccctttgtcccctctcccgcaaggggagag
ggagacgagagggccgttgatcaagccgacatcgtcgtcgccaccggcgccgcgccgccg
attgtcgagatgctcgacaccaaggaacggctgccgtgggccgggcactctgcgcgccac
gcgctgccggagatctacgatctgatccggcgcaacaccacgacgctggtgttcgtcaac
acccgcagccaggccgagatgctgttccaggagctttggcgcatcaacgacgacaacctc
gcgatcgcgctgcatcacggctcgctcgatgtcggtcagcgccgcaaggtcgaggacgcg
atggcggcgggacggctgcgcggcgtggtgtgtacgtcgtcgctcgatctcggcgtcgac
tggggcgacgtcgatctggtcgtcaatgtcggcgcacctaaaggctcgtcgcggctgatg
cagcgcatcggccgtgctaaccaccgcatcgacgaagcctcgcgcgccgtgctggtgccg
tccaatcgcttcgaagtgctggaatgcgtcgccgcaatcgatgctgtcgccgagaacgcg
caggacacgccgccgcagcgcaagggcgcgctcgacgtgctggcgcagcacattctcggc
tgcgcctgcggcgaaccgtttgtcgccgatgatctgtacgcggaaattcgcagcgctgcg
ccctatgcggatctgtcgcgcggtgatttcgacgacacgctcgatttcgtcgccagcggc
ggctacgcgctgaagagctacgagcgcttcgcccgcatcaagcaggacaagcagggcaaa
tggcgcgtcgccaatccgaaggtgcggcaggcctatcgcctgaatgtcggcaccatcgtc
gaagaggcgatgctgaaggtgaagctcgtgcgctcgtcgcgcgccaagggcggcggcagc
accggcgcgatcgcgcgcggcgggcggatgctcggccagatcgaagagggcttcatcgaa
ggcctgacagccggcgacacctttgtgttcggcggcgaggtggtgcgctacgaggcgctg
atggaggatcaggtctacgtctcgcgcgcccacgacaaggacgcgcgggtgccgtcctac
atgggtggcaagtttccgctctcgacctacctcgccgagcgcgtccgcggcctgctcgcc
gataagcgcagctggactggcctgccggatcaggtgcgcgattggttggcgctccagacc
gaggcctcgcaggtgccgggccggcgcgagctggtgatcgagacgttcccgcgtgccgcc
aagtactatctcgtctgctatccgttcgaggggcggctggcgcatcagacgctcggcatg
ctgctgacgcggcggctggaacgcgcccgcgcccggccgctcggtttcgtcgcgaatgaa
tacgccctcgcggtgtgggggctcagcgacatgtcgcagatgatccggcagggccggctc
gatctcgatgcgctgttcgatccggacatgctgggcgacgatctcgaagcctggctcgcg
gaatcggcgctgatgaagcgcaccttccgcaactgcgcgatcatctccggcctgatcgca
cggcgcttcgccggcgaagagaagtcgcgccgccaggtgctgttctcgaccgacctcgtc
tacgacgtgctcaacaagcatcagcccgaccatgtgctgctgcgcgccgcccgtgccgac
gccgccaccgggctgctcgatctgcggcgactgagtgatatgctgatgcgaatcaacggg
cgcatcgtccacaaggaactcgaccgggtgtcgccgctcgcggtgccggtgatgctggaa
atcggccgggaagccgtgtacggcgaggcctccgatgtcctgctcgccgaagccgccgat
gaactggtgcgcgaggcaatgagctga

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