Rhodopseudomonas palustris TIE-1: Rpal_2728
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Entry
Rpal_2728 CDS
T00722
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpal_2728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpt03019
]
Rpal_2728
03009 Ribosome biogenesis [BR:
rpt03009
]
Rpal_2728
Enzymes [BR:
rpt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rpal_2728
Messenger RNA biogenesis [BR:
rpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rpal_2728
Ribosome biogenesis [BR:
rpt03009
]
Prokaryotic type
rRNA processing factors
Rpal_2728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACF01237
LinkDB
All DBs
Position
complement(2959788..2962949)
Genome browser
AA seq
1053 aa
AA seq
DB search
MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSSRRRSRHRSHRR
RNNGERVQSEIVEAATDVAAEQPHEAADHHEAHEAGAHAEAERLMHELPEGETAEQHDAE
YAADHEHTHVEAAPSEPQVSAAAEPVTIEQPAAAEAPAPVEAPQAAASHDETDAHDDDHG
EDSANYAEDAPFPIDEHHEAEDEHEAHDDHVEGEHEVETDSDSDTEAEAEDDEEEDDEEE
AEEDVVESVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTY
LSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGASRTKP
EIKRDFEYLIRMWETVRDVTLNSQAPKLVYEEGSLIKRSLRDLYNKEIDEVLVAGEAGYR
EARDFMHMLMPSQVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEAL
VSIDVNSGRSTREHHIEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAV
ERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSV
ALQLLRGLEEVLMKGATHNLIVRTRTDVALYVLNHKRGHLRDLETGFRVSLSVLADPTVS
GQQSFVIDRGEQVHTLETAKALLAAQIAASPAPLDEPEDDDGYDFEAEIETDETVGLAED
QGSEAGESESEGRKRRRRRRRRRSGEPREAAEAGAVGEDGEQPFVSEGVEQVGEADEGDE
AGEDDSDAEARADQGENGERRPRRRGRRGGRRRRGNAEAGENEAGVVGSISDELSPTDEA
EAADAVADFDGGSPSVQPSFEPAAEAEQPHDAPPHDIVPSEPQHTAATAAPDTSDPSAED
DSAAKKAARRRSTVREKVSFGASAAASETTAEAAAEVQPEPTAQAEQPATAAPAVEAPAA
EAAPQAAAQPAEEPSSAAPRRVGWWSRRFGGGN
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctgatcgacgccacccacccggaagagacccgggtggtcgtggtc
cgtggcaaccgcgtcgaagagtttgatttcgaaaccgcccagcgcaaacaactccgcggc
aatatctatctcgcaaaagtcacccgggtcgaaccctcgctacaagccgccttcatcgaa
tatggcggcaatcgccacggcttcctcgccttcagcgaaatccatcccgactattatcaa
atcccggtcgccgaccggcaggccctgatcgaagccgacgaacgcgcccaccgcgaagcc
gaagaagaaaacgagcagcgctccagccgccgccggtcgcggcatcgcagccatcgccgc
cgcaacaacggcgagcgggtgcagagcgagatcgtcgaagccgctaccgacgtcgcggcc
gagcagccccacgaggctgccgaccatcacgaggcgcacgaggccggggctcacgccgag
gctgagcgcttgatgcacgagttgccggagggtgagaccgccgagcagcacgacgccgag
tacgccgccgatcacgaacacacccacgtcgaagctgctccgtccgagcctcaggtgagc
gctgcggccgagcccgtcacgatcgagcagccggcggctgccgaggctcccgcgccggtc
gaagccccgcaggcagcggcgtcgcacgacgaaaccgacgcgcacgacgacgaccacggc
gaggacagcgcgaactacgccgaggacgcgccgttcccgatcgacgagcaccacgaggcc
gaagacgaacacgaggcgcacgacgatcacgttgaaggcgagcacgaggtcgaaaccgac
tccgactccgacaccgaggcggaagccgaggacgacgaggaagaggatgacgaagaggaa
gccgaggaggacgtggtcgagtccgtcggcggtgacgacgtgctcgaggaagtgccggaa
cgcgccttccgtccgcgccggcagtacaagatccaggaagtcatcaagcgccgccaggtg
atgctggtgcaggtcgtcaaggaagagcgcggcaacaagggtgctgcgctcaccacctac
ctgtcgctcgccggccgttacgccgtgttgatgccgaacaccgcccgcggcggcggcatc
agccgcaagatcacctcggcccaggaccgctcacggctgaaggaagtggtgcaggacctc
gacgtgccggaaggcatgggcgtgatcctgcgcaccgccggcgcctcgcggaccaagccc
gagatcaagcgcgacttcgaatacctgatccggatgtgggagacggtgcgcgacgtcacg
ctgaactcgcaggcgccgaagctggtctatgaagaaggctcgctgatcaagcgctccctg
cgcgacctctacaacaaggaaatcgacgaggtgctggtcgccggcgaagccggctatcgc
gaagcccgcgacttcatgcacatgctgatgccgtcgcaggtgcgcgcggtgaagctgtat
cgtgacggccagccgctgttctcgcggatgggcgtcgagagccagctcgacgcgatgttc
tcgccgaccgtgcagctccgctccggcggctacatcgtcatcaaccagaccgaagcgctg
gtctcgatcgacgtcaactcggggcgctcgacccgcgagcaccacatcgaggacaccgcg
ctcaagaccaacatggaagccgccgaggaagtcgcccggcagctccggctgcgcgacctc
gccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaaccgcgcggtc
gagcgtaagctcagcgactgtctgcggcaggatcgcgctcgcatccaggtcggccgaatc
tcgcatttcggcctgctcgaaatgtcgcgccagcgcatccgcgccagcgtgctggagagc
tcgaccgagccctgcccgcattgcggcggctcgggccacgtccgctcggtctcctcggtc
gcgctgcagctgctgcgcggcctcgaagaggtgctgatgaagggcgcgacgcacaacctg
atcgtgcgcacccgcaccgacgtggcgctgtacgtcctcaaccacaagcgcggccatctg
cgcgacctcgagaccggcttccgggtatcgctgtcggtgctggccgatccgaccgtcagc
ggccagcagtcgttcgtgatcgaccgcggtgagcaggtccacacgctcgagactgccaag
gcgctcctcgccgcgcagatcgccgcctccccggcaccgctcgacgagcccgaggatgac
gacggctacgatttcgaagccgagatcgagaccgacgagaccgtcggcctcgccgaggat
cagggcagcgaagccggcgaaagcgaaagcgaaggccgcaagcgccgccgtcgccgccgg
cgtcggcggtcgggtgagccgcgtgaagccgccgaagctggtgcagtgggcgaagatggc
gagcagccgtttgtgtccgaaggcgtcgaacaggtcggcgaagctgatgaaggcgacgag
gccggcgaagacgacagcgacgccgaagcccgtgccgaccagggcgagaacggcgaacgc
cgtccgcgccgccgcggtcgtcgcggtggccgtcgccgtcgcggcaatgctgaggcaggc
gagaacgaagccggcgtggtcggctcgatcagcgacgaactctccccgacggacgaagcg
gaagctgcggacgctgtcgccgacttcgacggcggcagcccctcggtgcaacccagcttc
gaaccggctgccgaggccgagcagccgcacgacgctccgccgcacgacattgtgccgtcc
gagccgcagcacacggcagcgactgccgcacccgacaccagcgatccgtcggccgaggac
gacagcgcagcgaagaaggccgcgcgtcgccgctccacggtgcgcgaaaaggtgagcttc
ggcgcatcggccgccgcctccgaaacgacggcggaagccgcagccgaagtccagcccgag
ccgaccgctcaggccgagcagccggccacggccgcgcctgcggtggaagccccggccgcc
gaggccgcgccacaagcagccgcacaacccgcagaggagccctcctcggccgccccgcgg
cgcgtcggctggtggtcccgccgcttcggtggtggcaattaa
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