Rhodopseudomonas palustris TIE-1: Rpal_2787
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Entry
Rpal_2787 CDS
T00722
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03410
Base excision repair
rpt03430
Mismatch repair
rpt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rpal_2787
03430 Mismatch repair
Rpal_2787
03440 Homologous recombination
Rpal_2787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_2787
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Rpal_2787
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Rpal_2787
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rpal_2787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ATPgrasp_N
Motif
Other DBs
NCBI-ProteinID:
ACF01296
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All DBs
Position
3030382..3032223
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AA seq
613 aa
AA seq
DB search
MTPPISVLPAETVPAFLGVTRSATGKAWRDRLDARATAKAQAMVQRYQLPEMLARVLAGR
GVEIDQVEDFLDPTIRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEAR
RLGMSVVVIDHHQCGDELPDVDALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRG
FWTTERPEPNLLDMLHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVSR
LNGPPEAWHLGFMLGPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIE
QKAEAQAEAEAMASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGG
IGTGSGRSISGVDLGKAVRQAVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLAGD
VAKSRHVNELYIDGAVSARGVTTELAATLNRAGPFGAGNPEPIVALPAHQLIYADEVGQA
HLRLRFKAGDGAIVNGIAFRSVGQKLGNALTENRGQTLHVAGSLSVDRWQGAERVQLRVI
DVAVPDAGPTMIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctcccatctccgttttgccggccgagaccgtgccggcgtttctcggcgtgacc
cgctcggccaccggcaaggcgtggcgcgaccggctcgatgcccgcgccaccgccaaagcg
caggcgatggtgcagcgttatcaattgcccgaaatgctggcgcgggtgctggccgggcgc
ggtgtggagatcgaccaggtcgaggacttcctcgacccgaccatccgcaagctgatgccc
gatccggcgtcgctgacccagatggaagccggcgccaaacggatcgcggatgccgcctcg
cgcggcgagaaggtggcgatcttcggcgactacgacgtcgacggcgcgacgtcgtcggcg
ctgctcgcctggcatctgcgccactgcgggctcgatcctttgatccacattccggatcgc
atcttcgaaggctacggcccgaacatcgacgcgatccgcatgctcgccggcaaaggcgcg
acgctgctgatcaccgtggactgcggcaccaccagcctggagccgctcgcggaagcgcgg
cggctcgggatgagcgtggtggtgatcgatcatcaccaatgcggcgacgagctgccggac
gttgatgcgttgatcaatccgaaccggcccgacgacctgtccgggctcggccatcttgcc
gcggtcggcctggtgctgatgacgctggtcgcggtcaatcgcgagctgcggcatcgcggg
ttctggaccaccgagcggccggaaccgaacctgctcgacatgctccaccacgtcgcgctc
ggcacagtggcggacgtcgcgccgctggtcgggctcaaccgcgcgttcgtcgccaaaggc
ctgatcgcgatgcgtcgccgcgaccatgtcggccataccgcgctgatggacgtttcgcgg
ttgaacggtccgccggaggcgtggcatctcggcttcatgctggggccgcgcatcaacgct
ggcggacgcatcggccgcgccgatctcggcgtccggctgctgctcgaatccgacgtctct
gaggccgcccggatcgcggccgagctcgatcggctcaacagcgagcgccgcgagatcgaa
cagaaagccgaagcccaggcggaagccgaggcgatggcctcgctcgggctcgaggacaag
ggcgcagtgatcgtcacggcttccgaaggttggcaccccggcgtggtcgggctggtcgct
tcgcggctgaaggagaagttcggccggccgtcgtttgcgatcgcgctggagccgggcggc
atcggcaccggttcgggccgctcgatctccggcgtcgatcttggcaaggcggtgcgccag
gcggtgcatgacgggctgctgctgaagggcggcggtcacgccatggcggccggtgtgacg
ttgcgaaaagaacggctcgccgaattccgcgcctggctggagacgacgcttgccggcgac
gtcgccaagtcgcgccacgtcaacgagctgtacatcgacggcgcggtgtcggcgcgcggc
gtcacgacagaactggcggcgacgctgaaccgggcagggccattcggtgccggcaatccg
gagccgatcgtggcgctgccggcgcatcagctgatctacgccgacgaagtcgggcaggcg
catctgcggctgcgcttcaaggcgggggacggcgcgatcgtcaacggcatcgcgtttcgc
agcgtcggccagaagctcggcaatgcgctgaccgagaaccgcggccagacgctccacgtc
gccggcagcctcagcgtcgaccgctggcagggtgccgagcgggtgcagctccgcgtcatc
gacgtcgcggtgccggatgcagggccgacgatgatcaggtga
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