Rhodopseudomonas palustris TIE-1: Rpal_3270
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Entry
Rpal_3270 CDS
T00722
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03030
DNA replication
rpt03430
Mismatch repair
rpt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rpal_3270
03430 Mismatch repair
Rpal_3270
03440 Homologous recombination
Rpal_3270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpt03032
]
Rpal_3270
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_3270
Enzymes [BR:
rpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rpal_3270
DNA replication proteins [BR:
rpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rpal_3270
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rpal_3270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
T2SSK
HROB
Smaco_capsid
Motif
Other DBs
NCBI-ProteinID:
ACF01772
LinkDB
All DBs
Position
complement(3518923..3522378)
Genome browser
AA seq
1151 aa
AA seq
DB search
MSNAGFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGY
GIQPIVGLELGIDFGDQDPNSRHGALATPARIVLLAAREQGYRSLMRLNSRAFLETPVNQ
VPHVKLEWLEGETDGVIALTGGPDGPISLAMLTDPALAAQRCERLQQAFGDRLYVELQRH
GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRVQF
TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAA
AAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI
KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ
DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA
APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV
PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI
DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA
RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA
EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY
PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAGLK
GVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRARVFG
GADAIVAACQRNHEAATSGQNDMFGGLSDAPSIILPQLEPWLPAERLRREYDAIGFFLSG
HPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIGLSDP
TGHFEAVLFSEGLAQYREVLEPGAAVLMQLGAELQGEDVRARVLHAEPLDAAAAKTQKGL
RIFLRDTKFLDSVVKRLQPPETKVAGGNIALVLRLDPQTEVEFDIPGRYHVSPQIAGAIK
AVTGVEHVETL
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgccggattcgtccatctgcacgtccactcggcctattcgctgctgaaaggc
tcgatgaagatcgccaagctcgcggagctggcgaaggccgaccggcaaccggcgctggcc
cttaccgacaccgacaacatgttcggcgggctggaattctccgacaagctgtcgggctac
ggcatccagccgatcgtcgggctcgaactcggcatcgacttcggcgaccaggatccgaac
tcccgccacggtgcgctggcgaccccggcgcggatcgtgctgctggcggcgcgcgagcag
ggctatcgcagcctgatgcggctgaactcgcgggcgttcctggaaacgccggtcaaccag
gtgccgcacgtcaaactggagtggctcgagggtgaaaccgacggcgtgattgcgctgacc
ggcgggccggatgggccgatttcgctggcgatgctgaccgatccggcgctcgccgcgcag
cgctgcgagcggctgcagcaggcattcggcgatcggctctatgtcgaactgcagcgtcat
ggcaccgaggccgagcgccgcgccgaaggcgggctaattgatctcgcctatgacaagggc
ctgccgctggtcgcgaccaacgagccgcatttcgccagcaccgaggactacgaagcacac
gacgcgctgttgtgtatcgcgtccggcaagctgatcgccgaaaccgatcgcgttcagttc
accccggatcaccggttcaagacccgcgccgagatggcggtgctgttcgccgacctgccc
gaggccctggcatcgacggtggagatcgcacagcgctgcgcctaccggccgctcacccgc
aagccgatcctgccgctgttcaccgtcggcgccagcgtcagcgacgcggcggaagcagcc
gccgccgaagcggccgagctgcgccgccaggccgagcagggcctcgccaagcggctcagc
gttcacggcctgtcgccggggacgaccgaggaggactacaacaagcggctcgccttcgag
ctcgacgtcatcacccgcatgaaatacgcgggctacttcctgatcgtttcggacttcatc
aaatgggccaaggcccatggcattccggtcggtccgggccgtggttcgggcgccggctcg
ctggtggcgtattcgctgacgattaccgacctcgatccgatccggttcggcctgctgttc
gagcgcttcctcaatccggaacgcgtgtcgatgccggacttcgatatcgacttctgccag
gatcgccgcggcgaagtaatcgagtatgtgcagcatcgctatggtcgcgatcaggtggcg
cagatcatcaccttcggtaccctgcaggcgcgcggcgtgctgcgcgacgtcggccgcgtg
ctgcagatgccgtacggccaggtcgacaagctgaccaagctggtgccgcagaatccggcg
gcgccgatcaccctgaaacaggcgatcgaaggcgagccgaagctgcaggcggcgcgcgac
gaggacccgatcgtggcgcgcgcgttcgacatcgcgcagaagctcgaaggcctgacccgc
cacgcctcgacccacgcggccggcatcgtgatcggcgatcgcccgctcagcgacctggtg
ccgctgtatcgcgatccgaaatccgacatgccggtgacccagttcaacatgaagtgggtc
gaaccggcgggtctggtgaagttcgacttcctcggcctgaagacgctgacgacgctcgac
gtcgcggtgaagctgctcaagcagcgcgatatccatgtcgacctgcacacgctgccgatc
gacgacgcgccgagttatcagatgctggcccgcggcgatgtcgtcggcgtgttccaggtg
gaaagcgcgggcatgcggcgggcgctgatcgacatgcgccccgaccggttcgaagacatc
atcgcgctggtggcgctgtatcggccgggcccgatggcgaacatcccgacctactgcgcc
cgcaaacacggcgacgaggagcccgaatatctgcatccgatgctggagccgatcctgaag
gagacgttcggcgtcatcatctaccaggaacaggtgatgcagatcgcgcaggtgatggcc
ggctactcgctcggcgacgccgacctgctgcgccgcgcgatgggtaagaagatccgcgct
gagatggacaagcagcgcgcgatttttgtcgaaggcgcggtgaagaacggcgtcgccaag
gacgccgccgataccatcttcgaccttttggcgaagttcgccgactatggcttcaacaag
agccacgcggccgcctatgcgctggtgtcgtaccacaccgcctatatgaaggcgcactat
ccggtcgaattccttgccgcgtcgatgacgctggaaatccacaacaccgacaagctgtcg
gaattccgcgccgaggcgcagcggctcggcatcaaggtcgaggcgccctcggtcaatcgt
tcgggcgccaccttcgaggtcggcccgaacacgatcttctacgcgctcgccggcctgaag
ggcgtcggcatgcaggcggtgcagcagatcgtcgaggcgcggggcgatcggccgttcacc
tcgctcgcggacttctccgcccgggtcaatccgcgcgccatcaacaagcgagtcatcgag
tgcctcgccgccgccggcgcgttcgactgcctcgattccaaccgcgctcgtgtgttcggc
ggcgccgatgcgatcgtcgcggcctgccagcgcaatcatgaagccgcgaccagcgggcag
aacgacatgttcggcggcctgtcggacgcgccatcgatcatcctgccgcagctcgagccg
tggctgccggcggaacggctgcgccgcgaatacgatgcgatcggcttcttcctgtcaggc
catccgctcgacgactacgccaccgccttgaagcggctgcgggtgcagtcctgggcggaa
ttctgcaaggcggtgaaatccggcgccaccgcaggcaaggtggccgccaccgtggtgtcg
cggatggagcggcgcaccaagaccggcaacaagatgggcatcattggcctgtcggatccg
accgggcatttcgaggcggtgctgttctccgaaggtctggcgcaatatcgcgaggtgctg
gagcctggcgccgcggtgctgatgcagctcggcgccgaactgcagggcgaggacgtgcgc
gcccgcgtgctgcatgccgaaccgctcgatgccgcggcggcgaagactcagaagggcctg
cgcatcttcctccgcgacactaagttcctcgactcagtcgtcaagcggctgcagccgccc
gagaccaaggtggcgggcggcaacatcgcgctggtgctgcggcttgatccgcagaccgag
gtcgagttcgatattcccgggcgctaccacgtgtcgccgcaaattgccggtgcgatcaag
gcggtgacgggagtcgagcacgtcgaaacgctgtga
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