Rhodopseudomonas palustris TIE-1: Rpal_3455
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Entry
Rpal_3455 CDS
T00722
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rpt03016
]
Rpal_3455
Enzymes [BR:
rpt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Rpal_3455
Transfer RNA biogenesis [BR:
rpt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rpal_3455
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF2292
Motif
Other DBs
NCBI-ProteinID:
ACF01956
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All DBs
Position
3698789..3699967
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AA seq
392 aa
AA seq
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MDLISTSEQLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGI
DLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYGDSIAYDQL
VERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSE
EMEVLTSPSTYDVHPERAWERLKTRVRKPKELAVLMEIAAWREQEAQSRDVPRSRVLKDD
ALGDIATHAPTSLEKLANLRSLPKGFDRSKWGTEIVAAVQRGLARDMATLPKIDKPRNNS
NGTAIVELLKVLLRMTSERHAVAAKVIATVDDLEQIAADDNADVGALRGWRRELFGEAAL
ALKHGRLSLAIERGKVIQVDRNGATAGTTAGQ
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggacctgatttcaacttccgagcagcttgccgacgcctgcgcccgtctcgcccgccat
cccgtcatcacggtcgacaccgaatttctgcgcgagacgacgttctatccgctgctctgc
gtggtgcagatggcgagcgccgaagaagcgctggtgatcgacgcgctggccgacggcatc
gacctgaagccgttcttcgacctgatggcgaacgagcaggtgctgaaggtcttccacgcc
gcccgtcaggacatcgaaatcgtctggcaccgggccggcatcgtgccgcatccgatcttc
gacacccaggtcgccgcgatggtcctcggctatggcgacagcatcgcctacgaccagctc
gtcgagcgcatcaccggccaccgtccggacaagacccaccgcttcaccgactggtcgcgc
cgtccgctcacccaggagcaggttcactacgcggtctccgacgtcactcatctgcgcgac
gtgttcgccgcgctcgatgccgacctgaagaagcgcggccgcagtgattgggtcagcgag
gagatggaagtcctgacctcgccgagcacctacgacgtgcatccggagcgtgcctgggag
cggctgaagacacgcgtgcgcaagcccaaagagcttgcagtgctgatggagatcgccgcc
tggcgcgagcaggaagcacagagccgcgacgtgccgcgctcgcgcgtgctcaaggacgat
gcgctcggcgacatcgccacccacgcgccgacctcgttggaaaagctcgccaacctgcgc
tcgctgccgaaggggttcgatcgctcgaaatggggcaccgagatcgtcgcagcggtgcag
cgcgggctcgcgcgcgatatggcgacgctgccgaagatcgataagccgcgcaacaactcc
aacggcaccgcgatcgttgaactgctcaaagtgctgctgcggatgacctcggagcgccac
gccgtcgccgccaaggtgatcgcgaccgtcgacgacctcgaacagatcgcggccgacgac
aatgccgatgtcggcgcactgcgcggctggcgccgcgaactgttcggcgaggctgcgctc
gccctgaagcacggccggctgtcgctcgcgatcgaacgcggcaaggtcattcaggtcgac
cgcaatggcgcgacggcggggacaaccgcgggtcaatga
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