Rhodopseudomonas palustris TIE-1: Rpal_3686
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Entry
Rpal_3686 CDS
T00722
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rpal_3686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpt03021
]
Rpal_3686
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_3686
Enzymes [BR:
rpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rpal_3686
Transcription machinery [BR:
rpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rpal_3686
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rpal_3686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
RnfC_N
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
ACF02186
UniProt:
B3QBZ9
LinkDB
All DBs
Position
complement(3938638..3942840)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTA
MIGAEAIRELLKGLELEKIDAQLRAEMAETDSDIKHKKLAKRLKIVEAFRYSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMREGLPGEGKVFADLAELEHALY
SKVIHLHTKIKYRWHWVNEEGENTVRLLETTAGRILLGQVLPKSPKLPFDVINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPGSKWKIVDSTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISAVRKAPDGSEQQVNSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQADCGTSLGIKMRAIVDAGTVVASLGSRILGRTA
GEDVRDPATNEIIVKRGDLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFDGKIVIKNRAI
ARNGEGHNVAMVRNMVIAIVDPDGTERATHRIQYGARVHVDEGDMVKRGQRIAEWDPYTR
PILTEVEGTIDFEDLIEDQSISETLDESTGIAKRIVIDWRSTRGGADLRPAIVIKGKDGK
VLKLARGGDARYMLSVDAILSVDVGAQVKPGDILARISTESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEIAGTIRFGRDYKNKRRLSIEPLDKNEEAREYLIPKGKHIHLQDGDVVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEI
TDQGDTDMISGEQVDKIEFNALNAKAVEEGKKPATGNPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDRLILDEREKQ
AAIVPAAAPEAEPLSLPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaattatgaatctgttcaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgtcgccggagaagattctgtcgtggtcgtacggcgagatcaag
aagccggaaacgatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgactctgtcgcgcgtccgtcgc
gagcgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctgaagtcc
ttgccgtcgcgtatcgggcagctgctcgatatgacgctgaaggacctcgagcgcatcctg
tacttcgaatactacgtggtgctggagccgggcctcaccgacctcaaggagcgtcagctc
ctgtcggaggaggagtacctgcgcgcccaggatcagtacggccaggattcgttcaccgcc
atgatcggcgccgaagcgatccgtgagctgctgaaggggctcgaactcgaaaagatcgac
gcgcagctgcgcgccgagatggccgagaccgactctgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaagcgttccgctattccggcaacaagccggagtggatgatc
ctcacggtcgtgccggtgatcccgccggatctgcgcccgctggtgccgctcgacggcggc
cggttcgcgacctcggacctcaacgacctgtatcgccgcgtcatcaaccgtaacaaccgc
ttgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggctgtggacgcgctgttcgacaacggtcgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgatatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctcaagctgcatcagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgacgccaagggtctgtcgaccaccgtcaagcaggccaag
aagctggtcgagaaggagcggccggaggtttgggacatcctcgacgaggtgatccgcgaa
catccggtgctgctaaaccgcgccccgacgctgcatcgtctcggcattcaggcgttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtgtgctcggcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactacctgtcgatcatgcgggaa
ggcctgccgggcgagggcaaagtgtttgccgacctcgccgagctcgagcacgcgctgtac
tccaaggtcatccacctccacaccaagatcaagtatcgctggcattgggtgaacgaggaa
ggcgagaacaccgtccgtctgctggagaccaccgccggccgcatcctgcttgggcaggtg
ctgccgaagtcgccgaagctgccgttcgacgtcatcaacaagctgatgaccaagcgcgag
atctccggcgtcatcgaccaagtctatcgccactgcggtcagaaggagacggtgatcttc
tgcgaccggatcatggcgctcggcttcttcaacgcgttcaaggccggcatctcgttcggt
aaggacgacatggtcgtgccgggctcgaagtggaagatcgtcgactcgacccgtacgctg
gcgaaggacttcgagcagcagtacaacgacggcctcatcacccacggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggccaccgaagaaatcgccaaggagatgatgaaggag
atctccgcggttcggaaggcgcctgacggctccgaacagcaggtcaactcgatctacatg
atggcccactccggtgcgcgtggttcgcccgcgcagatgcgtcagctcgccggtatgcgc
ggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatttccaacttcaag
gaaggtctgtcggttctcgagtacttcaactcgacccacggcgcccgtaagggtctggcc
gacaccgcgctcaagaccgcgaactcgggttacctgacccgtcgtctggtcgacgtggcg
caggactgcatcatcacgcaggctgactgcggcacctcgctcggcatcaagatgcgggcg
atcgtcgacgccggcaccgtggtcgcctcgctgggcagccgtattctcggccgcaccgcg
ggcgaggacgtgcgcgacccggccaccaacgagatcatcgtcaagcgcggtgatctgatg
gaggagcgggacgtcgaggcgatccaccaggccggcgtgcaggaagtgaagatccgctcg
gcgctgacctgcgagctggtcaacggcatctgcggcaagtgctacgggcgcgatcttgcc
cgcggtactccggtcaaccacggcgaagcggtcggcgtcatcgcggcgcagtcgatcggt
gagccgggcacccagctgacgatgcgtaccttccacatcggcggtgcggcgcagatcaac
gagcagtcggtgatcgagtcgaacttcgacggcaagatcgtcatcaagaaccgcgccatc
gcccgtaacggcgaaggccacaatgttgcgatggtccgcaacatggtgatcgcgatcgtc
gatccggacggcaccgagcgtgcgacccatcgcatccagtacggcgcgcgcgtgcacgtc
gacgagggcgatatggtcaagcgtggccagcgtatcgccgagtgggatccgtacactcgt
ccgatcctcaccgaggtcgagggtaccatcgacttcgaagatctgatcgaggatcagtcg
atctccgaaacgctcgacgagtcgaccggtattgccaagcgtatcgtcatcgattggcgc
tcgacccgcggcggcgcggacctgcgtccggcgatcgtgatcaagggcaaggatggcaag
gtgctgaagctggcgcgtggcggcgacgcccgctacatgctctcggtcgacgccattctg
tcggtcgacgtcggcgcccaggtcaagcccggcgacatcctcgcgcgtatctcgaccgag
agcgccaagacccgcgacatcaccggcggtctgccgcgggtggcggagctgttcgaggcg
cggcggccgaaggatgcggcgatcatcgccgagatcgccggcactatccggttcggtcgc
gactacaagaacaagcgccggctctcgatcgagccgctcgacaagaacgaggaagcgcgc
gagtacctgatcccgaagggcaagcacatccacttgcaggacggcgacgtcgtcgaaaag
ggcgacttcatcgtcgagggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgcggcctatctcgtcaacgaaatccaggaggtctatcgactccagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgagatc
accgaccagggcgataccgacatgatctcgggcgagcaggtcgacaagatcgagttcaac
gcgctcaacgccaaggcggtcgaggagggcaagaagccggcaaccggcaatcctgtgctg
ctcggcatcaccaaggccagcttgcagacccgctcgttcttctcggcggcgtcgttccag
gagaccacccgggtgctcaccgaagccgcggtcaacggcaaggtggatccgctggaaggc
ctcaaggaaaacgtcatcgtcggccggctgatcccggcgggcaccggcgcctcgatggcc
aagatccgcgaagtggcggtgaagcgcgaccggctgatcctcgacgagcgcgagaagcag
gcggcgatcgttccggccgctgcgccggaagccgaaccgctgtcgctgccgccggcagag
taa
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