Rhodopseudomonas palustris TIE-1: Rpal_3687
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Entry
Rpal_3687 CDS
T00722
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rpal_3687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpt03021
]
Rpal_3687
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_3687
Enzymes [BR:
rpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rpal_3687
Transcription machinery [BR:
rpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rpal_3687
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rpal_3687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Glyco_hydro_46
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ACF02187
UniProt:
B3QC00
LinkDB
All DBs
Position
complement(3942983..3947107)
Genome browser
AA seq
1374 aa
AA seq
DB search
MAQQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGRPDEGLQAVFRS
VFPISDFSNASMLEFVRYEFEPPKYDVDECRQRGMTYAAPLKVTLRLIVFDIDEETGARS
VKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARIIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLMFALGLDGEEILSTFYNKILYKRT
KEGWRVPFDVNRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMSDEE
LVGNYLAEDLVNPKTGEIYAEAGEEITDKTLKMLNEQGYKELPLLDIDHVNVGPYIRNTL
NADKNMTREDALFDIYRVMRPGEPPTLDSAQNMFQSLFFDAERYDLSAVGRVKMNMRLDL
DAPDTHRTLRKEDILAVIKTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM
ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPY
RKVKEGRVTDEVVYLSAMEEGRYAVAQANVSLDAKGKFTDDLVVCRAGGTRDVVPMPADQ
VDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVA
RDSGAAIAARRTGIIDQIDATRIVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPL
VKVGDHVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTS
IHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPK
GESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIER
EEIERLAKDRDDEQAILDRNVYGRLADLLDGRQGIAGPKGFKKDTKITRAVLEEYPKSQW
WLFAAPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVK
RKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHL
GWACAGLGKRIGETIDAYYQSQDLKPLRETLRKIYGEDETIKSLDDGELLELGRNLSHGV
PIATPVFDGAKEADIEEMLKLAGFDASGQSTVYDGRTGDQFDRRVTVGYIYMLKLHHLVD
DKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAG
RTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKLAAPPPAEAAE
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagacgttcaccggtcgcaaacgcgttcgcaagtttttcggtcacatccgg
gaagtcgcggagatgccgaacctcatcgaggttcagaaggcatcttacgaccagttcctg
atggtcgccgagcctcccggaggacggccggacgagggcctgcaggcggtgttccggtcg
gtcttcccgatttcggacttctccaacgcctcgatgctcgaattcgttcgctacgaattc
gagccgccgaagtacgacgtcgacgagtgccgccagcgcggcatgacctatgctgcgccg
ctgaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggaaaccggcgcccgctcc
gtgaaggacatcaaggagcaggatgtctacatgggtgacatcccgttgatgacgatgaat
ggtaccttcatcgtcaacggtaccgagcgcgtcatcgtctcgcagatgcaccggtcgccg
ggtgtgttcttcgaccacgataagggcaagacccactcgtcgggcaagctgctgtttgcc
gcccgcatcatcccgtatcgcggctcctggctcgacatcgagttcgacgccaaggacatc
gtctatgcgcgtatcgaccgtcgccgcaagctgccggtgacgtcgctgatgttcgccctc
ggcctcgacggcgaagagatcctgtcgaccttctacaacaagatcctctacaagcggacc
aaggaaggctggcgcgttccgttcgacgtcaaccgcttccgtggctactcgaccgtcaac
gacctgatcgacgccgacaccggcaaggtcgtgctcgaggccggcaagaagctgactgtg
cgtgcagcccgtcagctgcaggaaaagggcctcaaggcgttgcggatgtccgacgaggag
ctcgttggcaactatctggccgaggatctggtcaacccgaagacgggtgagatctatgcg
gaagccggtgaggaaatcaccgacaagacgctgaagatgttgaacgagcagggctacaag
gagctgccgctgctcgacatcgaccatgtcaacgtcggcccgtacatccgcaacacgctg
aacgccgacaagaacatgacgcgcgaagacgcgctgttcgacatctaccgggtgatgcgt
ccgggcgagccgccgacgctcgactccgcgcagaacatgttccagtcgctgttcttcgac
gccgagcgctacgacctgtcggccgtgggccgcgtcaagatgaacatgcgcctcgacctc
gatgcgccggacacccatcgcacgctgcgcaaggaagacatcctggcggtgatcaagacc
ctggtcggcctgcgggacggcaagggcgagatcgacgacatcgaccaccttggcaaccgc
cgtgtgcgttcggtcggcgagctgatggagaaccagtaccgcatcggcctgctccgcatg
gagcgcgccatcaaggagcggatgagctcggtcgacatcgacaccgtgatgccgcaggac
ctgatcaacgccaagccggcggcggcggcggtgcgcgagttcttcggctcgtcgcagctc
tcgcagttcatggaccagaccaacccgctgtcggagatcacccacaagcggcgcctgtcg
gcgctcggcccgggcggtctgacccgtgagcgtgccggcttcgaagttcgcgacgtgcat
ccgacccactacggccgtatctgcccgatcgagacgccggaaggtccgaacatcggtctg
atcaactcgctggcgaccttcgcccgcgtgaacaagtacggcttcgtcgagactccgtac
cgcaaggtcaaggaaggccgcgtcaccgacgaggtggtgtatctgtcggcgatggaagag
ggccgttacgcggtggcgcaggccaacgtgtcgctcgatgccaagggcaagttcaccgac
gatctggtggtctgccgcgccggcggcacccgcgacgttgtgccgatgccggccgaccag
gtcgactacatggacgtgtcgccgaagcagctggtctcggtcgccgcggcgctgatcccg
ttcctcgagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggcg
gtgccgctggttcgcgccgaggcgccgttcgtcggcaccggcatggaaggcgtcgtcgcc
cgcgactcgggcgcggcgatcgccgcgcgccgcaccggcatcatcgaccagatcgacgcg
acgcgtatcgtcatccgcgccactgaggatctcgatccgaccaagtcgggcgtcgatatc
taccggctgatgaagtaccagcgctccaaccagtcgacctgcatcaatcagcgtccgctg
gtgaaggtcggtgaccacgtcaagaagggcgacatcatcgccgacggtccgtcgaccgat
ctcggtgagctcgcgctcggccgcaacgtgctcgtcgcgttcatgccgtggaacggctac
aacttcgaagactcgatcctgctctccgagcggatcgtgaaggaagacgtcttcacctcg
atccacatcgaggaattcgaggtgatggcccgcgacaccaagctcggccccgaggaaatc
acccgcgatattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggcatc
gtctacatcggcgccgaagtccgcgctggcgacatcctggtcggcaagatcacgccgaag
ggcgaaagcccgatgacgccggaagagaagctgctgcgcgccatcttcggtgaaaaggcc
tcggacgttcgcgacacctcgctgcgggtgccgccgggcgtgcagggcaccatcgtcgaa
gtccgcgtgttcaaccgccacggcgtcgacaaggacgagcgtgcgctggcgatcgagcgg
gaggagatcgagcgcctcgccaaggaccgcgacgacgagcaggcgattctcgaccgtaac
gtttacggccgtctcgccgacctgctcgacggtcgtcagggcattgccggtccgaagggc
ttcaagaaggacaccaagatcacccgtgcggtgctcgaggagtatccgaagtcgcagtgg
tggctgttcgctgccccgaacgacaagctgatggccgaaatcgaggccatgcggaagcag
tacgacgagtcgaagaagggcctcgaacagcgcttcctcgacaaggtcgagaagctgcag
cgcggcgacgaattgccgcccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaag
cgcaagatccagccgggcgacaagatggccggccgccacggcaacaagggtgtggtgtcg
aagatcgttccgatcgaggacatgccgttcctcgaggacggcactcacgccgacatcgtg
ctgaacccgctcggcgtgccgagccgcatgaacgtcggtcagatcctcgagacgcatctc
ggctgggcgtgcgccggtctcggcaagcgcatcggtgagacgatcgacgcctactaccag
agccaggatctcaagccgctgcgcgagaccctgcggaagatctacggcgaggacgagacc
atcaagtcgctcgacgatggtgagctgctcgaactcggccgcaatctcagccacggcgtg
ccgattgcgaccccggtgttcgacggtgccaaggaggccgacatcgaagagatgctgaag
ctcgcgggcttcgacgcttcgggtcagtcgactgtgtacgacggccgcaccggcgatcag
ttcgatcgtcgcgtcaccgtcggctacatctacatgctgaagctgcatcacctcgtggac
gacaagatccacgcccggtcgatcggtccgtactcgctcgtcacccagcagccgctgggc
ggtaaggcgcagttcggcggccagcgcttcggcgaaatggaggtgtgggcgctcgaagct
tacggcgcggcctacacgctgcaggaaatgctgacggtgaagtcggacgacgtcgccggc
cgcaccaaggtgtacgaggcgatcgtgcgcggcgacgacacgttcgaggccggtattccg
gaatcgttcaacgtgctcgtcaaggaaatgcgctcgctcggcctcaacgtcgacctgcac
aactccaagctggcggcgccgcctccggccgaggctgccgagtaa
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