Rhodopseudomonas palustris TIE-1: Rpal_4021
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Entry
Rpal_4021 CDS
T00722
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03420
Nucleotide excision repair
rpt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rpal_4021
03430 Mismatch repair
Rpal_4021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_4021
Enzymes [BR:
rpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rpal_4021
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rpal_4021
MMR (mismatch excision repair)
Other MMR factors
Rpal_4021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DUF3482
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACF02517
LinkDB
All DBs
Position
4309177..4311723
Genome browser
AA seq
848 aa
AA seq
DB search
MTDPTKRQPLDISSYQPTAGGIAARARAAAGPAYLSGLNPEQREAVETLDGPVLVLAGAG
TGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLGTFH
SIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQLLAADNIDDKRWPARMLAGLIDGWKN
RGLTPSQVPAGEAAMFGNGRGGKLYAQYQERLKILNAADFGDLLLENIRLFREHPDVLRS
YQNRFKFILVDEYQDTNVAQYMWLRLLSQTPSSSSLPGSTRQSISSQEDGSPGLAASRRP
GDDVETSGNVVASTSAPPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFPGAKVIRLERN
YRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGEMVTVTGAWDSEEEARAIGEEIEQLQR
QGHALNEIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRVINSPA
DDLAFERIVNVPKRGLGDATVQMLHDHARKRRIPLFEAARMVIDTDELKPKARSSLRGLI
ENFERWQVQRDALAHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENL
QGFLEHISLVMDREGGADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQRALDEQGRA
GLEEERRLAHVGITRARKRAKLYFATNRRIHGTWNTTIPSRFLDELPAANVEITESKGGS
GWGGMSGYGPSRFDNVESFGSSYSTPGWQRAQAQRGRSGGGSNGGRSGGFGESSSSYSSG
STRRAPFTIEGELVAKSTGTESAFSLKDRVFHQKFGYGHVTKIDGNKLTIVFDKAGEKKV
VDSFVERA
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatccgaccaagcgccagcctctcgacatctccagctatcagcccaccgccggc
ggcatcgccgcgcgcgcccgcgccgcggccggcccggcctatctgtccggcctcaacccg
gagcagcgcgaggcggtcgagacgctggatggcccggtgctggtgctggccggcgccggc
accggcaagacccgcgtgctgaccacgcggatcgcccacatcctctccaccggccgcgcc
cggcccgccgaaatcctgtcggtgaccttcaccaacaaggccgcgcgcgagatgaagctg
cggctcggccagatgctcggccaggcggtcgaaggcatgccgtggctcggcaccttccat
tcgatcggcggccgcatcctgcgctatcatgccgagctggtgcagctcacctcgaacttc
acggtgctcgacaccgacgaccagatccggctgctgaagcaactgctcgctgccgacaat
atcgacgacaaacgctggccggcgcggatgctggccgggctgatcgacggctggaagaac
cgcggcctgacgccgtcgcaggtgccggccggcgaagccgcgatgttcggcaacggccgc
ggcggcaagctctatgcgcagtatcaggagcggctgaagatcctcaacgccgccgacttc
ggcgatctgctcttggagaacatccgcctgttccgcgaacaccccgacgtgctgcggagt
taccagaaccgcttcaagttcatcctggtcgacgagtatcaggacacgaacgtggcgcag
tatatgtggctgcggctcttgtcgcagacgccttcctcatcgtcattgccgggctcgacc
cggcaatccatctcttcacaagaagatggatcaccgggtctcgccgcttcgcggcggccc
ggtgatgacgtcgagacgagtggcaacgtcgttgcctccacctccgccccgcccaaaaac
atctgctgcgtcggcgacgatgatcagtcgatctatggctggcgcggcgcggaggtcgac
aacatcctgcgtttcgaccacgacttccccggcgccaaggtcattcgcctggagcgcaac
tatcgctcgaccggccacatcctcgccgccgcctcgcatctgatcgcccacaacgaaggc
cggctcggcaagacgctgcgcaccgaggatgtcgacggcgagatggtcaccgtcaccggc
gcctgggattcggaagaagaggcccgcgcgatcggcgaagagatcgagcagctgcagcgc
cagggccacgcgctgaacgagatcgccatcctggtgcgcgcgtcgttccagatgcgcgag
ttcgaagaccgcttcgtcacgctcggcctgccctaccgcgtgatcggcggcccgcggttc
tatgagcgcgccgaaatccgcgatgcgctggcgtatttgcgggtgatcaactcgccggcc
gacgacctcgccttcgaacgcatcgtcaacgtgccgaagcgcggcctcggcgacgccacc
gtccagatgctgcacgatcacgcccgcaagcgacggattccgctgttcgaggcggcgcgg
atggtgatcgacaccgacgagctgaagccgaaagcgcgcagcagcctgcgcggcctgatc
gagaatttcgaacgctggcaggtgcagcgcgacgcgctggcgcataccgaactcgccgag
atcgtgctcgacgagagcggctacaccgagatgtggcagaaggatcgctccgccgacgcc
gccggccggctggagaacctgaaagaactcgtccgctcgatggaggagttcgagaatctg
cagggctttttggagcacatctcgctggtgatggaccgcgagggcggcgccgacgaagac
gccgtcagcgtgatgacgctgcactccgccaagggcctggaattcgagaccgtgttcctg
cccggctgggaggaagggctgttcccgcatcagcgcgcgctcgacgaacagggccgcgcc
ggcctggaagaagaacgccgcctcgcccatgtcggcatcacccgcgcccgcaagcgcgcg
aagttgtacttcgccaccaaccgccgcatccacggcacctggaacacgaccatcccgtcg
cgcttcctcgacgaacttccggccgccaatgtcgagatcaccgagtcgaaaggcggctcc
ggctggggcggcatgagcggctacggcccgtcgcggttcgacaacgtcgagtcgttcggc
tcgagctactcgacaccgggctggcagcgcgcccaggcgcagcgcggccgcagcggtggc
ggcagcaacggcggccgcagcggcggcttcggcgaaagcagctcgtcctactcgtccggc
agcacccgccgcgcgcctttcaccatcgaaggcgaactggtcgccaaatccaccggcacc
gagtcggcgttctcgctgaaggatcgcgtcttccaccagaagttcggctacggccacgtc
accaagatcgacggcaacaaactcaccatcgtgttcgacaaggccggcgagaagaaggtg
gtcgatagcttcgtggagcgggcctga
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