KEGG   Rhodopseudomonas palustris TIE-1: Rpal_4237
Entry
Rpal_4237         CDS       T00722                                 
Name
(GenBank) dicarboxylate/CoA ligase PimA
  KO
K01897  long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
Organism
rpt  Rhodopseudomonas palustris TIE-1
Pathway
rpt00061  Fatty acid biosynthesis
rpt00071  Fatty acid degradation
rpt01100  Metabolic pathways
rpt01212  Fatty acid metabolism
rpt02024  Quorum sensing
rpt04146  Peroxisome
Module
rpt_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:rpt00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    Rpal_4237
   00071 Fatty acid degradation
    Rpal_4237
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    Rpal_4237
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Rpal_4237
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:rpt01004]
    Rpal_4237
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rpt04147]
    Rpal_4237
Enzymes [BR:rpt01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     Rpal_4237
Lipid biosynthesis proteins [BR:rpt01004]
 Acyl-CoA ligase
  Long/very long chain acyl-CoA ligase
   Rpal_4237
Exosome [BR:rpt04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   Rpal_4237
  Exosomal proteins of breast cancer cells
   Rpal_4237
SSDB
Motif
Pfam: AMP-binding AMP-binding_C AMP-binding_C_3
Other DBs
NCBI-ProteinID: ACF02733
LinkDB
Position
complement(4549203..4550861)
AA seq 552 aa
MSHPGEQYYPPGVRWDAVIARGTLPELLAQAAKEYSSRPALEFRDRQITYTKLEAMAETA
AAALLAAGYGRDSSVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGA
RVLITTDSAALLPMAERFLAKGLLDRLIVCSDASWGESATPLAPLPSDPRVITYADFIKD
ASKPAAWPAISPDDIALLQYTGGTTGLPKGAMLTHSNLTSAVSIYDVWGLVRANSGGIHR
VICVLPLFHIYALTVILLRCLKQGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIAL
ANDPSLEKRDLSSLTMAGSGGAPLPVEVARLFERKTNLKLKSGWGMTETCSPGTGHPPEG
PDKPGSIGLMLPGIELDVVALDDPKRVLPPGEVGELRVRGPNVTKGYWNRPEESAHSFVG
DRFLTGDIGYMDQDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPAVQEVIVIGVPDD
YRGEAAKAFVKLRDGAKPFSIDELRAFLTGKLGKHELPTAVEFLDELPRTTVGKLSRHEL
RSQQTTTKTQTK
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgtcccatcccggtgagcagtactatccacccggcgttcgctgggatgcggtgatcgcg
agggggacattgccggagctgctggcgcaggccgcgaaggagtacagctcgcggccggcg
ctggagtttcgtgatcggcagatcacctacaccaagctcgaagcgatggccgagaccgcg
gcggccgcgctgctcgcagcaggctatggccgcgactcctcggtcgcgctgtatctcggc
aacaccccagaccatccgatcaatttcttcggcgcgctgaaggccggcgcccgcgtggtg
catctgtcgccgctcgacggcgagcgggcgctatcgcacaagctcagcgactccggcgcg
cgggtgctgatcacaaccgattccgccgcgctgctgccgatggccgagaggtttcttgcc
aagggcctgctcgaccgcctgatcgtgtgcagcgatgccagctggggcgagtccgcgacg
ccgctggcgccgctgcccagcgatccgcgggtgattacttacgccgacttcatcaaggac
gcgtccaaacccgcggcctggccggcgatttcgccggacgatatcgcgctgttgcaatac
accggcggcaccaccgggctgccgaagggcgcgatgctgacccattccaacctgacctcg
gcggtgtcgatctacgacgtctggggtctggtgcgcgccaatagcggcggcattcatcgc
gtgatctgcgtgctgccgctgtttcacatctacgcgctcaccgtgatcctgctgcgctgc
ctgaagcagggcgacctgatctcgctgcatcagcgcttcgacgtcgccgcggtgttccgt
gacatcgaggaaaagcgcgccaccgtgttccccggcgtgccgacgatgtggatcgcgctc
gccaacgatccgtcactggagaagcgcgatctgtcgtcgctgacgatggccggctccggc
ggcgcgccgctgccggtcgaggttgcgcggctgttcgagcgcaaaaccaatctgaagctg
aagagcggttggggcatgaccgagacctgctcgcccggcaccggccatccgccggaaggg
ccggacaagccgggctcgatcggcctgatgctgccgggcatcgaactggacgtcgtcgcg
ctcgatgatccgaagcgcgtgctgccgccgggggaagtcggcgaactccgcgttcgcggt
cccaatgtcaccaagggctactggaatcggccggaggagtccgctcacagttttgtcggc
gatcgttttctgaccggcgacatcggctatatggaccaggatggctacttcttcctggtc
gaccgcaagaaggacatgatcatctccggcggcttcaacgtctatccgcagatgatcgaa
caggcgatctatgagcacccggcggtgcaagaagtgatcgtgatcggcgtgccggacgat
taccgcggcgaggcggcgaaggcgttcgtcaagctgcgcgatggcgccaagccgttcagc
atcgacgagctgcgcgccttcctcaccggcaagctcggcaagcacgaactgccgaccgcg
gtggagtttctcgacgaactgccgcgcaccacggtgggcaaactgtcccgccacgaactg
cgcagccagcagaccaccaccaagacacagaccaagtaa

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