Rhodopseudomonas palustris TIE-1: Rpal_4572
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Entry
Rpal_4572 CDS
T00722
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt00061
Fatty acid biosynthesis
rpt00071
Fatty acid degradation
rpt01100
Metabolic pathways
rpt01212
Fatty acid metabolism
rpt02024
Quorum sensing
rpt04146
Peroxisome
Module
rpt_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Rpal_4572
00071 Fatty acid degradation
Rpal_4572
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Rpal_4572
09145 Cellular community - prokaryotes
02024 Quorum sensing
Rpal_4572
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rpt01004
]
Rpal_4572
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rpt04147
]
Rpal_4572
Enzymes [BR:
rpt01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Rpal_4572
Lipid biosynthesis proteins [BR:
rpt01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Rpal_4572
Exosome [BR:
rpt04147
]
Exosomal proteins
Exosomal proteins of breast milk
Rpal_4572
Exosomal proteins of breast cancer cells
Rpal_4572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
SH3_9
SH3_1
Motif
Other DBs
NCBI-ProteinID:
ACF03066
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All DBs
Position
4924516..4926447
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AA seq
643 aa
AA seq
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MMDYAGRVAAADTFPKLLRLNAKEFGTEIALREKDLGLWRVFTWADYQARVHDFALGMVE
LGLKRGDVIGIIGDNRPDWVSAEIATHAIGGLSLGLYRDVLDEEADYLLNYGEAKLVFAE
DEEQVDKLLGLADRAPHLKHIVYSDPRGMRKYDDPRLLPADQLAKLGRDRASREPGLYDR
LVDATQGEDVAILCTTSGTTAHPKLAMLASGRVLKHCATYLSFDPKGPDDEYVSVLPLPW
IMEQVYALGKGLLCRMKVNFVEEPDTMMNDFREIAPTFVLFAPRVWEGIAADVRARVMDA
SPLKQRLYNAGMKAGLAALDQGQHSAFADAVLFRALRDRLGFTRLRSAATGGAALGPDTF
RFFRAMGVPLRTLYGQTELLGAYTLHKPDAVDPDTTGVPMGAEIEIKVLNPDVQGIGEVV
VRHPNMFLGYYKNPEASTADIKDGWMHSGDAGYFNGAGQLVIIDRIKDLAELSHGERFSP
QYIENKLKFSPYVAEAVILGAGRDMLAAMICIRYSIISKWAEKKRIAFTTYSDLASRPEV
YELLRREVETVNATLPPAQRISRFLLLYKELDADDGELTRTRKVRRSVINEKYGDIIDGI
YSGRSDIPVDTTIKFQDGTTQRIRTTLRVVDLGAGHARAEAAE
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgatggactatgccggccgcgtcgcggcagccgacaccttccccaagctgctccggctc
aatgcaaaggaattcgggaccgagatcgcgctgcgcgagaaagatctcgggctgtggcgg
gtgttcacctgggccgactatcaggcccgcgtgcacgacttcgccctcggcatggtcgaa
ctcgggctcaagcgcggcgacgtgatcggcatcatcggcgacaaccggcctgactgggtt
tcggccgagatcgccacccatgcgattggcggcctgagcctcggcctgtaccgcgacgtg
ctcgatgaggaggccgactatctgctcaattacggcgaggccaagctggtgttcgccgag
gacgaggagcaggtcgacaagttacttggcctcgccgaccgcgcgccgcatctgaagcac
atcgtctattccgatccacgcgggatgcggaaatacgacgatccgcgcctcttgccggcc
gatcaactcgccaagctgggccgcgatcgcgccagccgcgaaccgggcctgtacgaccgg
ctggtcgacgcgacgcagggcgaagacgtcgccatcctgtgcaccacctcgggcaccacg
gcgcaccccaagctggcgatgctggcgtccgggcgcgtgctgaaacactgcgcgacctat
ctcagcttcgatccgaaggggcccgacgacgaatacgtctcggtactgccgctcccctgg
atcatggagcaggtttacgcactcggcaaagggctgctgtgccggatgaaggtcaacttc
gtcgaagagcccgacacgatgatgaacgacttccgcgagatcgcgccgaccttcgtgctg
ttcgcgccaagggtctgggaaggtatcgccgcggacgttcgcgcccgggtgatggacgcc
tcgccgctgaagcagcgactttacaacgccggcatgaaggccgggctggctgcgctcgac
cagggccagcattcggcgttcgccgacgcggtgctgttccgcgcgctgcgcgaccggctc
ggcttcacccggctgcgctcggccgcaaccggcggcgccgcgctcggcccggacaccttc
cgattcttccgcgccatgggagtgccgctgcgcacgctgtacgggcaaaccgaactgctc
ggcgcctacacgctgcacaagccggacgcggtcgatcccgacaccaccggcgtgccgatg
ggcgccgagatcgagatcaaggtcctgaaccccgatgtccagggcatcggcgaagtggtg
gtgcgccaccccaacatgttcctcggctactacaagaacccggaagcctcgaccgccgac
atcaaggacggctggatgcattccggcgacgccggctatttcaacggcgccggccagctc
gtcatcatcgaccgcatcaaggaccttgccgagctgtcgcacggcgaacggttctcgccg
caatacatcgagaacaagctgaagttctcgccctacgtcgccgaagcggtgatcctcggc
gccggccgcgacatgctggcggcgatgatctgcatccgctactcgatcatctcgaaatgg
gcggagaagaagcggatcgccttcaccacctattcggacctcgcctcccgccctgaagtc
tacgagctgctgcgccgcgaggtcgagaccgtcaacgccacgctgccaccggcccagcgc
atcagccgcttcctgctgctctacaaggagctcgacgccgacgacggcgagctgacgcgc
acccgcaaggtccgccgctcggtgatcaacgagaagtacggcgacatcatcgacggcatc
tatagtggacgtagcgacatcccggtcgataccaccatcaagttccaggacggcaccacc
cagcggatccgcaccacgctgagggtggtcgacctcggcgccggccacgcgcgtgcggag
gcagcggaatga
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