Rhodopseudomonas palustris TIE-1: Rpal_4668
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Entry
Rpal_4668 CDS
T00722
Name
(GenBank) Peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rpt
Rhodopseudomonas palustris TIE-1
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rpt01002
]
Rpal_4668
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rpt01011
]
Rpal_4668
Peptidases and inhibitors [BR:
rpt01002
]
Cysteine peptidases
Family C82
Rpal_4668
Peptidoglycan biosynthesis and degradation proteins [BR:
rpt01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Rpal_4668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ACF03159
LinkDB
All DBs
Position
5028430..5030604
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AA seq
724 aa
AA seq
DB search
MRDHSTGRRGFEGVLMAVAATFLTVSATSVLAQSPTRSPADLAIDAAVPVPSPVDLPPPS
VGDFKPETPAAKPETAAVPAPAEPAKDVAATPAPAAPEPSKDTAATAPAPEPKMEAPAAT
ATAPAAVPAKPAINQAETTKPAEPQKPASTVAAADQPVAEQLRDLIAKSASRYFERKSER
SAVEKFYETRDYAPVWTKAGALTAQAKGVIARLKDAAADGLDPDDYPVPSFTAATSPEAL
AEAELRLTESMMDYARQAQSGRMHWSQVSADIQYPEHPIDPAQVLAKVTTAADASAALDS
YNPPHKLYRELKKKLAELRGEGDKPVIKIADGETLRYQPARKKRAEVKMDDPRVPQLRAR
LGVTENPDSTTYDATVAAAVRKFQDHADLKASGVLDERTVKALNTPKRDRTIDTIIVNME
RWRWLPRDLGAPSLGDAYVILNIPDYTLKVMQHGAEVWTTRVVTGKPGKHATPLLTETMK
YITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHISQPPGEANALGRI
RFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDVYASTLLNIAMPEKDYTPAKV
RAMYGRSEVDLKFPTPIPVNITYQTAFVDDAGKLQLRKDVYGRDAAMLGLLKNDKGKNLE
AVVAHAQPNYSRPTRLPDGVSVAGDYTGSSGASSSPFSFLENLFGGPQPRQQPAQRNQRR
VYAR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcgagatcactcgactggacgtcgcggtttcgaaggcgtgctgatggccgtcgcggcg
accttcctcaccgtgtcggcgacctccgtcctggcgcagtcgccgacgcggtcgcccgcg
gatctcgcgatcgatgccgccgtcccggtgccgagcccggtcgatctgccgccgccctcg
gtcggtgacttcaagcccgagacccctgccgccaagcccgagacagcggccgtccctgcg
cctgccgaaccggccaaggacgttgccgccaccccggcaccggcagcccccgaaccgagc
aaggataccgcggcaactgcgcccgcgcccgagcccaaaatggaagctccggcggccacc
gccaccgctcctgccgccgtccccgccaagccggccatcaatcaggcggagaccaccaag
cccgccgaaccgcagaagccggccagcacggttgctgctgccgaccagccggtggcggag
cagcttcgcgatctgatcgccaagagcgcgtcgcgctacttcgagcgcaagtccgagcgc
agcgcggtggagaagttctacgagacccgcgactacgcaccggtgtggaccaaggccggc
gcgctgaccgcgcaggccaagggcgtgatcgcgcggctgaaggacgccgcggccgacggc
ctcgatccggacgactatccggtgccgagcttcaccgccgcgacctcgcccgaagcgctg
gcggaggcggagctgcggctcaccgagagcatgatggactatgcgcgtcaggcgcagagc
ggccggatgcactggtcgcaggtgtcggccgacatccaatatccggagcatccgatcgat
ccggcccaggtgttggcgaaggtcaccaccgcggccgacgcttccgcggcgctcgacagt
tacaacccgccgcacaagctgtatcgcgagctgaagaagaagctcgccgagctgcgcggc
gaaggcgacaagccggtgatcaagatcgccgacggcgagactctgcgttatcagccggcc
cgcaagaagcgcgccgaagtaaagatggacgatccgcgcgtgccgcagctgcgcgcccgc
ctcggcgtcaccgagaacccggatagcaccacctacgacgcgacggtcgcggcggcggtg
cggaaattccaggatcacgccgacctcaaggctagcggcgtgctcgatgagcgcaccgtc
aaggcactgaacacgccgaagcgcgaccgcaccatcgacaccatcatcgtcaacatggaa
cgctggcgctggctgccgcgcgatctcggcgcgccgtcgctcggcgacgcctatgtgatc
ctcaacattccggactacacgctgaaggtgatgcagcacggcgccgaagtgtggacgacc
cgcgtcgtcaccggcaagccgggcaagcacgccaccccgctgctgacggagacgatgaag
tacatcaccgtcaacccgacttggaacgtgccgccgtcgatcatctacaacgagtatctg
ccggcgctgcagcaggatcccaccgtgctcgaccgcatgggcctaaagctggagcgcaat
cgcgacggctctatccacatctcgcagccgccgggagaagccaacgcgctcggccgcatc
cgcttcaacttcccgaacaagttcctggtgtatcagcacgacaccccggacaagaatctg
ttcgcccgcgaggagcgcgccttcagccacggctgcatgcgggtgcagaaccccgacgtg
tacgcctcgacgctgctgaacatcgcgatgccggagaaggactacaccccggccaaggtc
cgggcgatgtacggccgcagcgaggtggatctgaagttcccgaccccgatcccggtcaac
atcacctatcagaccgcgttcgttgacgacgccggcaagttgcagctccgcaaggacgtg
tacggccgcgacgcggcgatgctggggctgctcaagaacgacaagggcaagaacctggaa
gcggtggtggcgcacgcccagccgaactactcccgcccgacccggctgcccgacggggtg
agcgtcgccggcgactacaccggctcgtcgggcgcctcgtcgagcccgttctcgttcctg
gagaacctgttcggcggcccgcagccgcgtcagcagccggctcagcgcaatcagcgccgg
gtttacgcccgctga
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